Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30406.Seq
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical pr...    66   4e-11
AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and trans...    66   4e-11
U39998-7|AAK71422.2|  100|Caenorhabditis elegans Hypothetical pr...    59   3e-09
L08403-3|AAT92076.1|  335|Caenorhabditis elegans Hypothetical pr...    35   0.086
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    32   0.61 
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    30   1.9  
U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    29   4.3  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   7.5  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protei...    28   9.9  
AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm rece...    28   9.9  

>Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical
           protein K02C4.4 protein.
          Length = 723

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 31/62 (50%), Positives = 40/62 (64%)
 Frame = +3

Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNNY 431
           FKC +CGT+L LKTY NN++   DKEVYCS+HVP  GP  L  +S    S  N+  +N+ 
Sbjct: 34  FKCYICGTRLALKTYCNNRNDINDKEVYCSNHVPIAGPHDLPMASTN-GSGKNLENNNHV 92

Query: 432 VN 437
            N
Sbjct: 93  KN 94



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +1

Query: 172 CFRCNEIVYQVDRVGPLKDFTFFHSGC 252
           C RC + VY  D+VGPLKD TFFH GC
Sbjct: 7   CNRCGKQVYPTDKVGPLKDSTFFHQGC 33


>AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and
           transglutaminase domainprotein protein.
          Length = 723

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 31/62 (50%), Positives = 40/62 (64%)
 Frame = +3

Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNNY 431
           FKC +CGT+L LKTY NN++   DKEVYCS+HVP  GP  L  +S    S  N+  +N+ 
Sbjct: 34  FKCYICGTRLALKTYCNNRNDINDKEVYCSNHVPIAGPHDLPMASTN-GSGKNLENNNHV 92

Query: 432 VN 437
            N
Sbjct: 93  KN 94



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +1

Query: 172 CFRCNEIVYQVDRVGPLKDFTFFHSGC 252
           C RC + VY  D+VGPLKD TFFH GC
Sbjct: 7   CNRCGKQVYPTDKVGPLKDSTFFHQGC 33


>U39998-7|AAK71422.2|  100|Caenorhabditis elegans Hypothetical
           protein ZK622.4 protein.
          Length = 100

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = +3

Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGP 365
           FKC +CGT+L+LKTY+NN++   D EVYC+ HVP  GP
Sbjct: 32  FKCWICGTRLSLKTYHNNRNDNTDLEVYCAGHVPTPGP 69



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +1

Query: 172 CFRCNEIVYQVDRVGPLKDFTFFHSGC 252
           CFRC    Y  D++GPLKD + FH GC
Sbjct: 5   CFRCKRPTYFNDKMGPLKDGSMFHKGC 31


>L08403-3|AAT92076.1|  335|Caenorhabditis elegans Hypothetical
           protein F42H10.3 protein.
          Length = 335

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +3

Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNN 428
           FKC VCG  L +K Y        DK  YC  H PK     + ++    R A N    +N
Sbjct: 32  FKCTVCGMTLNMKNYKG-----YDKRPYCDPHYPKTVASVMADTPEMRRIAENTKNQSN 85


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 322 TKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSG-R 498
           T   T+  T ++S   T +TP   SEA ST    ITT++  +E+ + T       R G  
Sbjct: 177 TTMVTSTPTTEKSSTTTTSTP--TSEATSTTTAMITTTSGTTENPTTTDCPTKVCRYGFH 234

Query: 499 PTVERPRV 522
           PT+   +V
Sbjct: 235 PTIRNGKV 242


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
 Frame = +1

Query: 139 KMYRPNFYESTCFRCNEIVYQV---DRVGPLKDFTFFHSGCLSVPCAEPN*P*RPITITS 309
           K  R + YE++     EI       DR+   +  T  HS   +VP         P T T+
Sbjct: 212 KCPRGSIYEASDLDAEEIQLACSVDDRIPLFRTTTTTHSSLTAVPGTTEETSTEPETTTT 271

Query: 310 IGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTS 459
               T+  T  +T  ++     T+    S   +T     TT+T  S  TS
Sbjct: 272 STTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTTTTTPTTTTTTTSTTTS 321


>U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK813.5 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 303 NQHWTEDKEVYC--SSHVPKIG--PGHLDNSSVGIRSAL 407
           N  WT+ KEV C  S   P IG  PG+ DNS V   S++
Sbjct: 315 NDVWTKVKEVMCCRSYDPPTIGHMPGYRDNSDVSPASSV 353


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 809 KXGXPXRPGIPSRNXXFLLPXVSRIPGT 726
           K G P RPG+P RN    +P     PGT
Sbjct: 94  KPGHPGRPGLPGRNGKPGVPGAPGRPGT 121


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA-ITTSTNR-SEDTSGTAM 471
           T+T+    T   T+  T   S   T TTP  ++E+ ST P + +TTST   S  T+G + 
Sbjct: 448 TVTT-SPSTSPVTSTVTSSSSSSTTVTTPT-STESTSTSPSSTVTTSTTAPSTSTTGPSS 505

Query: 472 SQN 480
           S +
Sbjct: 506 SSS 508


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA-ITTSTNR-SEDTSGTAM 471
           T+T+    T   T+  T   S   T TTP  ++E+ ST P + +TTST   S  T+G + 
Sbjct: 448 TVTT-SPSTSPVTSTVTSSSSSSTTVTTPT-STESTSTSPSSTVTTSTTAPSTSTTGPSS 505

Query: 472 SQN 480
           S +
Sbjct: 506 SSS 508


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 304 TSIGRKTKKYTALATYQRSVRATWTTPQWAS-EALSTCPKAITTSTNRSEDTSGTAMSQN 480
           TS G  T     L+T   S  +T + P   S   +ST P A TTS +    TSG + S  
Sbjct: 505 TSSGPSTVSERTLST--TSGPSTTSGPSTTSGSTVSTTPGASTTSGSTQSTTSGPSTSSG 562

Query: 481 CLRSGRPTV 507
              + R TV
Sbjct: 563 PSTASRSTV 571


>U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protein
           58 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 778 GIPGRIGXPNLKXXXXRFXTRKFPGEKG 861
           G+PG  G P L     R  T  +PGE G
Sbjct: 176 GVPGITGAPGLDGIPGRHGTPGYPGEPG 203


>AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 85 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 219 FEGLHLLS*WMFKCAVCGTKLTLKTYY 299
           F+G +LL  W+F CA CG  +    Y+
Sbjct: 123 FDGGYLLC-WVFGCAACGISMVTVKYF 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,136,382
Number of Sequences: 27780
Number of extensions: 445299
Number of successful extensions: 1334
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)