Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30405.Seq
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)           44   1e-04
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)                    27   9.0  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)
          Length = 175

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
 Frame = -2

Query: 407 SKLVGLRAATTSMMVSRNL-------AAAQKATDPIQQLFLDKIREYKQKSAGGKVPD 255
           S+L     +T S+++ RN+       A   K  DPIQ+LF++K+  YKQKS GGK+ D
Sbjct: 81  SRLAVASPSTCSIVLRRNIGTTYAAMAKMDKNADPIQRLFVEKLEAYKQKSKGGKLID 138


>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
          Length = 1250

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 431  IGIRNMLVSKLVGL--RAATTSMMVSRNLAAAQKATDPIQQLFLDKIREYKQKSAGGKVP 258
            IG+  +LVS L GL  R    +   +   A  Q+ATDP      D +    + +AGG+  
Sbjct: 1062 IGVAGLLVS-LFGLYTRRRELAAAFTHTPAVNQRATDPHATEGTDDVTPPAKAAAGGRTA 1120

Query: 257  D 255
            D
Sbjct: 1121 D 1121


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 447 RNSLIDRN*KYARIKTGWFEGGDHFHDGQ*KFSGSSESYR 328
           RNSL+ RN   +  +  ++  GD F  G  K + SSE Y+
Sbjct: 326 RNSLLRRNQSLSAKQIMFYRNGDRFFSGL-KLAVSSERYK 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,815,754
Number of Sequences: 59808
Number of extensions: 266253
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)