Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30404.Seq
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   120   4e-28
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   120   4e-28
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.67 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.88 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   1.2  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   2.7  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.2  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   6.2  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   8.2  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  120 bits (288), Expect = 4e-28
 Identities = 52/77 (67%), Positives = 67/77 (87%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 202 ARVRKNTEARRKGRHCG 252
            R+RK   A+R GRH G
Sbjct: 61  FRIRKTHAAKRLGRHTG 77



 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 42/87 (48%), Positives = 57/87 (65%)
 Frame = +3

Query: 255 GKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVL 434
           GKR+GTA ARMP   +W                + KID+HLYH+LY++AKGN FK+KR L
Sbjct: 79  GKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRAL 138

Query: 435 MEYIHRKKAEKARTKMLSDQAEARRIK 515
           +E+I R KAE  RTK++ +Q +ARR +
Sbjct: 139 IEHIQRAKAEANRTKLIQEQQDARRAR 165


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  120 bits (288), Expect = 4e-28
 Identities = 52/77 (67%), Positives = 67/77 (87%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 202 ARVRKNTEARRKGRHCG 252
            R+RK   A+R GRH G
Sbjct: 61  FRIRKTHAAKRLGRHTG 77



 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 42/87 (48%), Positives = 57/87 (65%)
 Frame = +3

Query: 255 GKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVL 434
           GKR+GTA ARMP   +W                + KID+HLYH+LY++AKGN FK+KR L
Sbjct: 79  GKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRAL 138

Query: 435 MEYIHRKKAEKARTKMLSDQAEARRIK 515
           +E+I R KAE  RTK++ +Q +ARR +
Sbjct: 139 IEHIQRAKAEANRTKLIQEQQDARRAR 165


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 224 SVFLRTRAREWTATGFLMTRPSLIILRMFC 135
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 165 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 76
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 144 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 49
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -1

Query: 515 LYSAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 390
           +Y+  LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 319 VYTVQLSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 276 WQYLFSYQATVTTLSTCLCVFADTGAGVDCYRFLDDE 166
           WQYLF  +  VT L   + +F      V+   FL DE
Sbjct: 219 WQYLFLIEGGVTFL-CAIVIFLVLPVSVETANFLTDE 254


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 4   GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 117
           G  +++    K  K L +S+        W D NE+NE+
Sbjct: 9   GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 460 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 368
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,567
Number of Sequences: 5004
Number of extensions: 69071
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)