Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30404.Seq
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 123 2e-28
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 122 4e-28
07_03_1639 + 28305801-28305958,28306240-28306249 38 0.014
03_02_0050 + 5272471-5274861 31 1.2
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 29 3.8
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 29 6.6
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 29 6.6
04_04_1687 - 35365766-35366356,35367137-35368135 29 6.6
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 29 6.6
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 29 6.6
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 28 8.7
04_03_0266 + 13648287-13649099,13649186-13649524 28 8.7
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 123 bits (297), Expect = 2e-28
Identities = 59/97 (60%), Positives = 73/97 (75%), Gaps = 5/97 (5%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 202 ARVRKNTEARRKGRHCGL-----VREEVLPMRVCHRR 297
+R R+ EA++KGRH G RE LP ++ R
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMR 97
Score = 112 bits (269), Expect = 4e-25
Identities = 55/99 (55%), Positives = 62/99 (62%)
Frame = +3
Query: 219 HRGT*KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 398
H KG GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 399 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
KGN+FKNKRVLME IH+ KAEKAR K LSDQ EA+R K
Sbjct: 127 VKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 122 bits (294), Expect = 4e-28
Identities = 58/97 (59%), Positives = 73/97 (75%), Gaps = 5/97 (5%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 202 ARVRKNTEARRKGRHCGL-----VREEVLPMRVCHRR 297
+R R+ EA++KGRH G RE LP ++ R
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMR 97
Score = 113 bits (271), Expect = 2e-25
Identities = 63/134 (47%), Positives = 74/134 (55%)
Frame = +3
Query: 219 HRGT*KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 398
H KG GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 399 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK*RRHASAARNVLPPRRRNCCR 578
KGN+FKNKRVLME IH+ KAEKAR K LSDQ EA+R K AS R + R
Sbjct: 127 VKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK--SKASRERKIARRDERLAQG 184
Query: 579 PSLEKTKPRLPLRS 620
P E P +P ++
Sbjct: 185 PR-EPAAPAVPAQT 197
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 37.5 bits (83), Expect = 0.014
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3
Query: 393 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
MK KGN+ NKR + +AEKAR + LSDQ EA+ K
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQFEAKLAK 41
>03_02_0050 + 5272471-5274861
Length = 796
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -1
Query: 560 SWRQYVPRGACVPPLLYSAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 408
++R+++ +C+P L+ + L +HL P LLS +P+D L H H +L H+
Sbjct: 82 AYRRHLSPPSCLPSLVPLLPV-LPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 141 VLSGVGVCDLIDFIWIQPHLLFTTSHNRGCKPLLQLEGTHPDTV 10
VL G D D WI PH T +R C +L LEG DT+
Sbjct: 519 VLDQEGWFDTGDIGWIAPHC--PTGPSRKCGGMLVLEGRAKDTI 560
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +1
Query: 37 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 207
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 208 VRKNTEARRKGRHCG 252
+ T RKGR G
Sbjct: 806 DEETTSISRKGRAQG 820
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 450 RKKAEKARTKMLSDQAEARRIK 515
RKKAE+A K +++AEARR K
Sbjct: 208 RKKAEEAEAKRKAEEAEARRKK 229
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 171 HQETCSSPLPRPCPQKHR 224
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +1
Query: 10 HRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK 180
+RVR L K V R LDP +NE N R N+ IKD L ++
Sbjct: 530 YRVRAIDTNLLKLTWKHVHRKAPHVALLDPAVVNETTLKNDRANMMGYIKDCLFARQ 586
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +1
Query: 37 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 207
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 208 VRKNTEARRKGRHCG 252
+ T RKGR G
Sbjct: 757 DEETTSISRKGRAQG 771
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +3
Query: 399 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK*RRHASAARNVLPPRRRNCCR 578
++ +F+ KR + K A A+T LSDQ RR+K R N P +C
Sbjct: 733 SESEIFRVKR--RSGVSVKPASDAKTSNLSDQQVLRRLKKVRPEIQQHNKRPEDYGHCSV 790
Query: 579 PS 584
PS
Sbjct: 791 PS 792
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 76 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 222
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,667,003
Number of Sequences: 37544
Number of extensions: 544168
Number of successful extensions: 1323
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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