Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30404.Seq
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   118   6e-27
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    36   0.039
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    32   0.63 
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.83 
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    29   3.3  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    29   3.3  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical p...    28   7.7  
AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical ...    28   7.7  
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  118 bits (284), Expect = 6e-27
 Identities = 50/77 (64%), Positives = 67/77 (87%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 202 ARVRKNTEARRKGRHCG 252
            R R+  EARRKGRH G
Sbjct: 61  FRAREYEEARRKGRHTG 77



 Score =  109 bits (262), Expect = 3e-24
 Identities = 52/94 (55%), Positives = 62/94 (65%)
 Frame = +3

Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
           KG     GKRRGTANARMP+K LW                AKK+D+HLYH LY++AKGN 
Sbjct: 72  KGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNN 131

Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           FKNK+ L+EYI +KK E  R K L+DQA+ARR K
Sbjct: 132 FKNKKNLIEYIFKKKTENKRAKQLADQAQARRDK 165


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -3

Query: 333 IFLEPFVFVPIVPSVAYAHWQYLF-SYQATVTTLSTCLCVFADTGAGVDCYRFLDDETIL 157
           IF+EPF    IV    +  W+  F ++   +  ++T  C+FAD  +     R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFAD-ASPAKWTRLQDDDVAI 460

Query: 156 DHLTDVLSGVGVCDLIDFI 100
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 566 PPSWRQYVPRGACVPPLLYSAGLSL 492
           P SW QY P+G C+ P+   A  S+
Sbjct: 221 PNSWHQYQPKGTCIQPVTLPASWSI 245


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 118  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 252
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 519 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 623
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 450 RKKAEKARTKMLSDQAEARRI--K*RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 623
           +KK +K R+   SD++   R+  K RR  S  R   P  +      S  + +PR P RS+
Sbjct: 130 KKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSR 189


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 450 RKKAEKARTKMLSDQAEARRI--K*RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 623
           +KK +K R+   SD++   R+  K RR  S  R   P  +      S  + +PR P RS+
Sbjct: 130 KKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSR 189


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 130 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 243
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 312 FVPIVPSVAYAHWQYLFSYQATVTTL 235
           F+ IVP+  Y ++ Y  +YQ +VT L
Sbjct: 300 FIKIVPTKIYGYFSYTMAYQYSVTFL 325


>AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 312 FVPIVPSVAYAHWQYLFSYQATVTTL 235
           F+ IVP+  Y ++ Y  +YQ +VT L
Sbjct: 300 FIKIVPTKIYGYFSYTMAYQYSVTFL 325


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -2

Query: 535 ALACLLYFIRRASAWSLSIFVLAFSAFFLWMYSMSTRLF 419
           AL  +LY I +A  + + IFVLA   FFL+ +  S ++F
Sbjct: 108 ALFNVLYIITQA--FHVLIFVLAVERFFLYFFPSSEKVF 144


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 540 RNVLPPRRRNCCRPSLEKTKPRLP 611
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,606,852
Number of Sequences: 27780
Number of extensions: 415637
Number of successful extensions: 1016
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)