Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30404.Seq
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.30 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.30 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.8  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   8.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 549 LPPRRRNCCRPSLEKTKPRLPLRSKHL 629
           + PR++NCCR  L K     P RSK +
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSKRI 415


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 549 LPPRRRNCCRPSLEKTKPRLPLRSKHL 629
           + PR++NCCR  L K     P RSK +
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSKRI 415


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 18  QDEFPQAAEEACSLCYAMW*KEG 86
           +DEF +  +  CSLC   + ++G
Sbjct: 263 EDEFDEFGDSKCSLCQRRFEEQG 285


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 376 RCLSIFLAVLYFRSNFLRTLCLC 308
           RC+ +FL+V+   S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,353
Number of Sequences: 438
Number of extensions: 5583
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)