Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30404.Seq
         (884 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   118   4e-27
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   117   1e-26
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   116   2e-26
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    46   4e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    29   5.4  
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    28   9.5  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    28   9.5  
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    28   9.5  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  118 bits (285), Expect = 4e-27
 Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           M SLK+QKRLAASVM+CGK KVWLDPNE  +I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 202 ARVRKNTEARRKGRHCGL-----VREEVLPMRVCHRR 297
           +R R   EA+RKGRH G       RE  LP ++   R
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMR 97



 Score =  111 bits (267), Expect = 6e-25
 Identities = 54/94 (57%), Positives = 62/94 (65%)
 Frame = +3

Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
           KG     GKR+GT  AR+P K LW                +KKIDRH+YH +YMK KGNV
Sbjct: 72  KGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNV 131

Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           FKNKRVLME IH+ KAEKAR K L+DQ EA+RIK
Sbjct: 132 FKNKRVLMESIHKMKAEKAREKTLADQFEAKRIK 165


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  117 bits (281), Expect = 1e-26
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           M SLKLQKRLAASVM+CGK KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 202 ARVRKNTEARRKGRHCGL-----VREEVLPMRVCHRR 297
           +R RK   A+ KGRH G       RE  LP +V   R
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMR 97



 Score =  108 bits (260), Expect = 4e-24
 Identities = 52/94 (55%), Positives = 60/94 (63%)
 Frame = +3

Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
           KG     GKR+GT  AR+P K LW                 KKID+H+YH +YM+ KGNV
Sbjct: 72  KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNV 131

Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           FKNKRVLME IH+ KAEKAR K LSDQ EA+R K
Sbjct: 132 FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  116 bits (279), Expect = 2e-26
 Identities = 56/97 (57%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 202 ARVRKNTEARRKGRHCGL-----VREEVLPMRVCHRR 297
           +R R+   A+RKGRH G       RE  LP +V   R
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMR 97



 Score =  111 bits (266), Expect = 8e-25
 Identities = 54/94 (57%), Positives = 60/94 (63%)
 Frame = +3

Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
           KG     GKR+GT  AR+P K LW                 KKIDRH+YH +YMK KGNV
Sbjct: 72  KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNV 131

Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           FKNKRVLME IH+ KAEKAR K LSDQ EA+R K
Sbjct: 132 FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 357 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 467
           KKID+ +Y H ++MK KG V+KNK VLME +H+   E+
Sbjct: 29  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -2

Query: 493  WSLSIFVLAFSAFFLWMYSMSTRL 422
            W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 182 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 87
           GFL   P +++L M  +     +S+IS+  NH
Sbjct: 2   GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 98  GSNHTFFLPHRITEAASLFCSLRELI 21
           G+N+ F    R+   AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323


>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 790 VTAQGFSPSPDVVKNDGPGKL 728
           + ++G + SP+++KN+GPG L
Sbjct: 484 IVSKGRTSSPNILKNNGPGSL 504


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,750,285
Number of Sequences: 28952
Number of extensions: 400203
Number of successful extensions: 972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)