Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30403.Seq
(880 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 57 1e-07
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 57 1e-07
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 57 1e-07
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 57 1e-07
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 57 1e-07
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 57 1e-07
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 57 1e-07
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 57 1e-07
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 57 1e-07
AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein. 31 7.3
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 56.8 bits (131), Expect = 1e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 35.9 bits (79), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 34 GVDPKFLRNMRFAKKHNKKGLKKM 57
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 56.8 bits (131), Expect = 1e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 35.9 bits (79), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 34 GVDPKFLRNMRFAKKHNKKGLKKM 57
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 56.8 bits (131), Expect = 1e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 35.9 bits (79), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 34 GVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 56.8 bits (131), Expect = 1e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 35.9 bits (79), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 34 GVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 56.8 bits (131), Expect = 1e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 35.9 bits (79), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 34 GVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 56.8 bits (131), Expect = 1e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 35.9 bits (79), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 34 GVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 56.8 bits (131), Expect = 1e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 35.9 bits (79), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 34 GVDPKFLRNMRFAKKHNKKGLKKM 57
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 56.8 bits (131), Expect = 1e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 35.9 bits (79), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 34 GVDPKFLRNMRFAKKHNKKGLKKM 57
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 56.8 bits (131), Expect = 1e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 45
Score = 35.9 bits (79), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 49 GVDPKFLRNMRFAKKHNKKGLKKM 72
>AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.
Length = 1857
Score = 30.7 bits (66), Expect = 7.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 514 VTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAAEWRW 645
+TGK A +L+ + +P G K P P+A PN + W
Sbjct: 1762 LTGKVEAEFHLVTAEEAEKNPVGKARKEPEPLAKPNRPDTSFSW 1805
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,203,807
Number of Sequences: 237096
Number of extensions: 2194607
Number of successful extensions: 4145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4145
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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