Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30403.Seq
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical pr... 57 2e-08
AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical... 47 2e-05
AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 5.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 5.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 5.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 5.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 5.8
>Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical
protein B0513.3 protein.
Length = 62
Score = 56.8 bits (131), Expect = 2e-08
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRK 242
MAKSKNHTNHNQN+KAHRNGI KP+K
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGITKPKK 26
>AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical
protein Y47H9C.14 protein.
Length = 87
Score = 47.2 bits (107), Expect = 2e-05
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +3
Query: 171 KSKNHTNHNQNRKAHRNGIKKPRK 242
K +NHTNHN+N KAHRNGI KP+K
Sbjct: 14 KPENHTNHNRNNKAHRNGITKPKK 37
>AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical
protein Y37H9A.5 protein.
Length = 167
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +3
Query: 171 KSKNHTNHNQNRKAHRNGIKKPR 239
KSKNHTNHNQN AHR GI KP+
Sbjct: 80 KSKNHTNHNQNNTAHRIGITKPK 102
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -3
Query: 548 IKLGNARVFPVTTCKTTA-SEL*YDSL*GELGTGPPLEXXXXXXXXXXFICLQLMFISWP 372
+K+ NA++ T K TA + DS +L P ++ + + + W
Sbjct: 1492 LKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKSQLTDKVADEGEPLRWN 1551
Query: 371 LLLG*LFSQPPSRVAWLASGYPSCKTFDSLKILDPCQGWF 252
L L P + V+WL +G P K+ D+++++D G +
Sbjct: 1552 LELD--GPSPGTEVSWLLNGQPLTKS-DTVQVVDHGDGTY 1588
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -3
Query: 548 IKLGNARVFPVTTCKTTA-SEL*YDSL*GELGTGPPLEXXXXXXXXXXFICLQLMFISWP 372
+K+ NA++ T K TA + DS +L P ++ + + + W
Sbjct: 2132 LKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKSQLTDKVADEGEPLRWN 2191
Query: 371 LLLG*LFSQPPSRVAWLASGYPSCKTFDSLKILDPCQGWF 252
L L P + V+WL +G P K+ D+++++D G +
Sbjct: 2192 LELD--GPSPGTEVSWLLNGQPLTKS-DTVQVVDHGDGTY 2228
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -3
Query: 548 IKLGNARVFPVTTCKTTA-SEL*YDSL*GELGTGPPLEXXXXXXXXXXFICLQLMFISWP 372
+K+ NA++ T K TA + DS +L P ++ + + + W
Sbjct: 2132 LKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKSQLTDKVADEGEPLRWN 2191
Query: 371 LLLG*LFSQPPSRVAWLASGYPSCKTFDSLKILDPCQGWF 252
L L P + V+WL +G P K+ D+++++D G +
Sbjct: 2192 LELD--GPSPGTEVSWLLNGQPLTKS-DTVQVVDHGDGTY 2228
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -3
Query: 548 IKLGNARVFPVTTCKTTA-SEL*YDSL*GELGTGPPLEXXXXXXXXXXFICLQLMFISWP 372
+K+ NA++ T K TA + DS +L P ++ + + + W
Sbjct: 1492 LKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKSQLTDKVADEGEPLRWN 1551
Query: 371 LLLG*LFSQPPSRVAWLASGYPSCKTFDSLKILDPCQGWF 252
L L P + V+WL +G P K+ D+++++D G +
Sbjct: 1552 LELD--GPSPGTEVSWLLNGQPLTKS-DTVQVVDHGDGTY 1588
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -3
Query: 548 IKLGNARVFPVTTCKTTA-SEL*YDSL*GELGTGPPLEXXXXXXXXXXFICLQLMFISWP 372
+K+ NA++ T K TA + DS +L P ++ + + + W
Sbjct: 2132 LKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKSQLTDKVADEGEPLRWN 2191
Query: 371 LLLG*LFSQPPSRVAWLASGYPSCKTFDSLKILDPCQGWF 252
L L P + V+WL +G P K+ D+++++D G +
Sbjct: 2192 LELD--GPSPGTEVSWLLNGQPLTKS-DTVQVVDHGDGTY 2228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,899
Number of Sequences: 27780
Number of extensions: 314420
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -