Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30402.Seq
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    67   2e-12
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    66   5e-12
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    62   6e-11
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    40   3e-04
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    40   3e-04
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    27   2.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.6  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   6.1  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 27/47 (57%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           +E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG EKL+++P GG
Sbjct: 23  IESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 28/47 (59%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           +E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG EKLS++P  G
Sbjct: 23  IESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 25/47 (53%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           +E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG EKL+++P GG
Sbjct: 23  IESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGG 69


>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 417 FXKXHXGTKWKANPFGGAXHAKGIVXXKXGXKLSXP 524
           + K   GT +K++PFGG+ HAKGIV  K G +   P
Sbjct: 27  YKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQP 62



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +1

Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
           +KNG KV AF P  GCLN   +        FG KG   G I G  F+
Sbjct: 75  IKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFK 121



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 20/41 (48%), Positives = 22/41 (53%)
 Frame = +2

Query: 455 PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
           PF      KG         AK PNSAIRKCVRVQL++   K
Sbjct: 40  PFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 417 FXKXHXGTKWKANPFGGAXHAKGIVXXKXGXKLSXP 524
           + K   GT +K++PFGG+ HAKGIV  K G +   P
Sbjct: 27  YKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQP 62



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +1

Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
           +KNG KV AF P  GCLN   +        FG KG   G I G  F+
Sbjct: 75  IKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFK 121



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 20/41 (48%), Positives = 22/41 (53%)
 Frame = +2

Query: 455 PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
           PF      KG         AK PNSAIRKCVRVQL++   K
Sbjct: 40  PFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 443 MEG*PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQL 559
           +EG PFR     +G   R      K PNSA+RK  RV+L
Sbjct: 45  LEGSPFR-----RGVCTRVFTVKPKKPNSAVRKVARVRL 78


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 1    VEKILSSVGIEADAEKLKKVITELNG 78
            V++I   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 119 SFSRPAAISCSTSLPLSSVITFLSFSASASIPT 21
           SF  P+A +   S P+SS+ +F + SA+++ P+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPS 483


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 268 TKLYKSTRRWSLFQFMF 318
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,806
Number of Sequences: 5004
Number of extensions: 20176
Number of successful extensions: 51
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)