Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30402.Seq
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 62 6e-10
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 54 8e-08
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 54 8e-08
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 40 0.003
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 40 0.003
07_01_1001 - 8460467-8460799 38 0.006
07_03_0321 + 16757414-16757743 36 0.024
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 32 0.39
01_06_0098 - 26416768-26416998 31 0.90
12_01_0090 + 717524-719080 29 4.8
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 61.7 bits (143), Expect = 6e-10
Identities = 26/48 (54%), Positives = 40/48 (83%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK +S+P GGG
Sbjct: 23 IKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = +1
Query: 10 ILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
IL SVG E D K++ ++++L GKD+ ++IA+GREK +S+P GGG
Sbjct: 219 ILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCGGG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = +1
Query: 10 ILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
IL SVG E D K++ ++++++GKD+ +LIA GREK +S+P GGG
Sbjct: 26 ILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSGGG 70
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
+KNG K+ AF P GCLN + FG KG VG I G F+
Sbjct: 74 VKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +2
Query: 455 PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
PF KG AK PNSAIRKC RVQL++ K
Sbjct: 39 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKK 79
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
+KNG K+ AF P GCLN + FG KG VG I G F+
Sbjct: 74 VKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
+KNG K+ AF P GCLN + FG KG VG I G F+
Sbjct: 244 VKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 290
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +2
Query: 455 PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
PF KG AK PNSAIRKC RVQL++ K
Sbjct: 39 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKK 79
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +2
Query: 455 PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
PF KG AK PNSAIRKC RVQL++ K
Sbjct: 209 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKK 249
>07_01_1001 - 8460467-8460799
Length = 110
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 138
V IL +VG + D +KL + ++ GKD+ +++AAG E L+ VG
Sbjct: 23 VRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 123
V IL +VG + D +KL + ++ GKD+ +++AAG E L+
Sbjct: 23 VRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +2
Query: 455 PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
PF KG AK PNSAI KC RVQL++ K
Sbjct: 110 PFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKK 150
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 559 LKNGXKVXAFXPRXGCLN 612
+KNG K+ AF P GCLN
Sbjct: 145 VKNGKKIAAFVPNDGCLN 162
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKD 84
V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 21 VVKIIETVHIEADSAEFKSIVQRLTGKD 48
>12_01_0090 + 717524-719080
Length = 518
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 140 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIF 6
PP + S P ++ S+S SS + + ++S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,092,053
Number of Sequences: 37544
Number of extensions: 152989
Number of successful extensions: 312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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