Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30402.Seq
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               61   1e-09
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               48   1e-05
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               39   0.003

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 26/47 (55%), Positives = 39/47 (82%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           ++ IL SVGIE+D E+L KVI+EL+GK V+++I AG+ KL+++P GG
Sbjct: 672 IKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSKLATVPTGG 718


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = +3

Query: 417 FXKXHXGTKWKANPFGGAXHAKGIVXXKXGXKLSXP 524
           + K H GT  KANPFGGA HAKGIV  K G +   P
Sbjct: 26  YKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +2

Query: 434 GYEMEG*PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
           G  ++  PF      KG         AK PNSAIRKCVRVQL++   K
Sbjct: 32  GTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 79



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXG 687
           +KNG K+ AF P  GCLN   +        FG +G  VG I G
Sbjct: 74  IKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPG 116


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
           +KNG K+ AF P  GCLN   +        FG +G  VG I G  F+
Sbjct: 75  IKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFK 121



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +2

Query: 476 RKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
           R+  R +     AK PNSAIRKCVRVQL++   K
Sbjct: 47  RRRRRQQEPGVEAKQPNSAIRKCVRVQLIKNGKK 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,195
Number of Sequences: 59808
Number of extensions: 156675
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)