Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30402.Seq
(709 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic ri... 64 6e-10
CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein. 64 6e-10
CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein. 64 6e-10
BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, larg... 64 6e-10
BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, larg... 64 6e-10
BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, larg... 64 6e-10
BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, larg... 64 6e-10
AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2 pr... 64 6e-10
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 48 3e-05
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 48 3e-05
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 48 3e-05
>M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P2 mRNA, complete cds. ).
Length = 115
Score = 63.7 bits (148), Expect = 6e-10
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVGIEAD ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 23 IKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
>CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 63.7 bits (148), Expect = 6e-10
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVGIEAD ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 23 IKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
>CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 63.7 bits (148), Expect = 6e-10
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVGIEAD ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 23 IKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
>BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 63.7 bits (148), Expect = 6e-10
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVGIEAD ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 23 IKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
>BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 63.7 bits (148), Expect = 6e-10
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVGIEAD ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 23 IKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
>BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 63.7 bits (148), Expect = 6e-10
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVGIEAD ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 23 IKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
>BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 63.7 bits (148), Expect = 6e-10
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVGIEAD ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 23 IKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
>AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2
protein.
Length = 115
Score = 63.7 bits (148), Expect = 6e-10
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVGIEAD ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 23 IKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = +3
Query: 411 EDFXKXHXGTKWKANPFGGAXHAKGIVXXKXGXKLSXP 524
+ + K H GT KANPFGGA HAKGIV K G + P
Sbjct: 25 KQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 62
Score = 39.9 bits (89), Expect = 0.009
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
+KNG K+ AF P GCLN + FG KG VG I G F+
Sbjct: 75 IKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = +3
Query: 411 EDFXKXHXGTKWKANPFGGAXHAKGIVXXKXGXKLSXP 524
+ + K H GT KANPFGGA HAKGIV K G + P
Sbjct: 25 KQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 62
Score = 39.9 bits (89), Expect = 0.009
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
+KNG K+ AF P GCLN + FG KG VG I G F+
Sbjct: 75 IKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = +3
Query: 411 EDFXKXHXGTKWKANPFGGAXHAKGIVXXKXGXKLSXP 524
+ + K H GT KANPFGGA HAKGIV K G + P
Sbjct: 25 KQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 62
Score = 39.9 bits (89), Expect = 0.009
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
+KNG K+ AF P GCLN + FG KG VG I G F+
Sbjct: 75 IKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,815,152
Number of Sequences: 237096
Number of extensions: 753493
Number of successful extensions: 1299
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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