Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30402.Seq
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    53   2e-07
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    46   4e-05
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    46   4e-05

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +3

Query: 417 FXKXHXGTKWKANPFGGAXHAKGIVXXKXGXKLSXP 524
           + K H GT+WK+NPFGGA HAKGIV  K G +   P
Sbjct: 27  YKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQP 62



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +2

Query: 410 RRFXEXPXGYEMEG*PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
           +R+ +   G   +  PF      KG         AK PNSAIRKCVRVQL++   K
Sbjct: 25  KRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +1

Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
           +KNG K+ AF P  GCLN   +        FG  G  VG I G  F+
Sbjct: 75  IKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFK 121


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/47 (42%), Positives = 30/47 (63%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           V K+L + G++ D E    V+  L GK + ++IA G+ KLSS+P GG
Sbjct: 23  VLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLSSVPSGG 69


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/46 (50%), Positives = 32/46 (69%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 138
           ++ ILS+VG++ADAE  K V++ L GK VE+LIA G   L S+  G
Sbjct: 23  LKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGG 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,657,591
Number of Sequences: 27780
Number of extensions: 117693
Number of successful extensions: 280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)