Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30402.Seq
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 56 2e-08
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 56 2e-08
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 56 3e-08
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 56 3e-08
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 56 3e-08
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 56 3e-08
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 48 8e-06
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 46 2e-05
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 40 0.001
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 40 0.001
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 31 0.75
At5g38240.1 68418.m04610 serine/threonine protein kinase, putati... 28 7.0
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p... 27 9.2
At1g67140.1 68414.m07638 expressed protein 27 9.2
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GREKL+S+P GGG
Sbjct: 23 IKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GREKL+S+P GGG
Sbjct: 23 IKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 23 IKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 23 IKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 23 IKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 23 IKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++KI+ SVG E D EK+ + + +DV +LIA GREK++++ GGG
Sbjct: 23 LKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKMAALSSGGG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVG E D K+ + + + DV +LIAAGREK+S++ GG
Sbjct: 23 LKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSALSSGG 69
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
+KNG K+ AF P GCLN + FG KG VG I G F+
Sbjct: 74 IKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +2
Query: 455 PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
PF KG AK PNSAIRKC RVQL++ K
Sbjct: 39 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK 79
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 559 LKNGXKVXAFXPRXGCLNPXXKTPXY*WRXFGPKGXXVGXIXGFVFR 699
+KNG K+ AF P GCLN + FG KG VG I G F+
Sbjct: 74 IKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +2
Query: 455 PFRXXXSRKGHRPRXXWXXAKXPNSAIRKCVRVQLLRTEXK 577
PF KG AK PNSAIRKC RVQL++ K
Sbjct: 39 PFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK 79
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 4 EKILSSVGIEADAEKLKKVITELNGKDVE----QLIAAGREKLSSMP 132
E++L G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At5g38240.1 68418.m04610 serine/threonine protein kinase, putative
similar to receptor serine/threonine kinase PR55K
gi|1235680|gb|AAC49208; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 588
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 614 GFRQPSRGXNAXTXFPFLRAVXGRICGWQS 525
G P R N FPFL + G +CG S
Sbjct: 36 GCGTPFRCGNITAGFPFLGGIRGEVCGHHS 65
>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide acetyltransferase
(E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
contains Pfam profiles PF00198: 2-oxo acid
dehydrogenases acyltransferase (catalytic domain),
PF00364: Biotin-requiring enzyme, PF02817: e3 binding
domain; supporting cDNA
gi|5881964|gb|AF066080.1|AF066080
Length = 637
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 521 PNSAIRKCVRVQLLRTEXKXPH 586
PNS IRK + +LL ++ K PH
Sbjct: 411 PNSQIRKIIAKRLLESKQKIPH 432
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 120 QLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLL 4
Q L++GR L+++L L++LS SF D + D+L
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDIL 1441
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,213,037
Number of Sequences: 28952
Number of extensions: 111578
Number of successful extensions: 215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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