Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30401.Seq
         (594 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    25   0.64 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   7.8  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 298 RVRXXGGAPPTAAXRTRSNIKPSSVYILSLEFLFHLIYMVLWIENKR*LLYGR 140
           RVR   G PP     T   +  SS+  + ++F     +   W + +  L YG+
Sbjct: 55  RVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPR--LAYGK 105


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 232 SSVYILSLEFLFHLIYMV 179
           S VY+L L  L  L+YMV
Sbjct: 267 SVVYVLILYILESLLYMV 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,334
Number of Sequences: 336
Number of extensions: 1832
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)