Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30400.Seq
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 112 7e-26
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 112 7e-26
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.82
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 2.5
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 5.8
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.8
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 7.7
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 112 bits (269), Expect = 7e-26
Identities = 56/92 (60%), Positives = 65/92 (70%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRSASISV 284
TG VYNVT ++GV++ K V G Y ++V
Sbjct: 61 TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNV 91
Score = 103 bits (246), Expect = 4e-23
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 83 RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVS 142
Query: 434 -GTEKPVLLAPIPYE 475
+PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 112 bits (269), Expect = 7e-26
Identities = 56/92 (60%), Positives = 65/92 (70%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRSASISV 284
TG VYNVT ++GV++ K V G Y ++V
Sbjct: 61 TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNV 91
Score = 102 bits (245), Expect = 6e-23
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 83 RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVS 142
Query: 434 -GTEKPVLLAPIPYE 475
+PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 29.1 bits (62), Expect = 0.82
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = -3
Query: 448 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 284
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 283 TDIDALRYNPPR 248
++RY+ R
Sbjct: 504 RAFGSIRYSGGR 515
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 121 SPTLYTFMYVESGIVPCVRNLRANKSLVPXR*PLEFVIF 5
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -2
Query: 713 GQSVRXXSXITPAGEKGXFAARRLKLGNA---RXFPVTTL*NDGPVNCNTDSLLGRN 552
G+ V + E G FAA+ LK GN R P+ T+ + VN N + L R+
Sbjct: 139 GEPVEMDPVLAAEIEDGTFAAKNLKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRS 195
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 80 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 184
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 7.7
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 230 DCQQACSRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400
+C + CS + P I + K DF KR E +R+ +E A KTV L Q
Sbjct: 157 ECIRLCSL-VHPNDPAILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,735
Number of Sequences: 5004
Number of extensions: 66495
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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