Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30400.Seq
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 113 1e-25
10_08_0310 - 16669565-16669822,16670558-16670794 111 9e-25
01_06_1794 - 39919363-39920025 29 3.5
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 4.6
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 6.1
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 28 8.1
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 8.1
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 8.1
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 113 bits (273), Expect = 1e-25
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338
TGRV+NVT A+GV +NK+V + R + V + + ++ LR+ K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIK 111
Score = 68.1 bits (159), Expect = 8e-12
Identities = 33/76 (43%), Positives = 49/76 (64%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEGPKPGFMVE 142
Query: 434 GTEKPVLLAPIPYEFV 481
G + PIPY+ V
Sbjct: 143 GATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 111 bits (266), Expect = 9e-25
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYR 266
TGRV+NVT A+GV +NK+V + R
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86
Score = 70.5 bits (165), Expect = 2e-12
Identities = 34/76 (44%), Positives = 50/76 (65%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVE 142
Query: 434 GTEKPVLLAPIPYEFV 481
G + PIPY+ V
Sbjct: 143 GATLET-VTPIPYDVV 157
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 329 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 466
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 116 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 217
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 108 YKVGDIVDIRGNGAVQKGMPHKVY 179
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +2
Query: 395 RQPAPPKAAHIVSGTEKPVLLAPIPYEFVA*SPIKYFXXXXXXXNSRGGPVPNFALI 565
RQP PP S +++P LLAP P + SP K P P AL+
Sbjct: 436 RQPTPPP-----SPSQQPPLLAPQPVQASPTSPAKQHAPPAPSSVQTSPPTPQSALV 487
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 356 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 484
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 116 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 211
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,198,044
Number of Sequences: 37544
Number of extensions: 481177
Number of successful extensions: 1230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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