Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30400.Seq
         (843 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           27   0.94 
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    26   1.2  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          25   3.8  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   8.8  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 26.6 bits (56), Expect = 0.94
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 311  RQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPP 412
            R++  +R +E  +L  EA  A +  N + QP PP
Sbjct: 1101 REEDERRTEERRQLHNEANRAYRQRNRRSQPTPP 1134


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 182 WKDRSRVQRDCSCSRCDCQQACSRRIIPK 268
           W   S  +R    S+C C  A +RR+ PK
Sbjct: 419 WVSSSAFERLLDSSKCTCPIALARRLDPK 447


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 296 KHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 439
           KH  C  +     +E +++ KEA    +T+NL +     +A  +  GT
Sbjct: 323 KHRLCELNREPTEREEQQMQKEAAVMARTMNLNQVCLCFRAYRVEPGT 370


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 151 TAPLPLMSTMSPTLYTFMYVE 89
           TA +P  S + PTL+  MY E
Sbjct: 607 TAGVPQGSVLGPTLWNLMYNE 627


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 868,827
Number of Sequences: 2352
Number of extensions: 18425
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89305416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)