Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30400.Seq
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   122   4e-28
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    30   1.8  
Z81073-9|CAB03030.2|  583|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U00065-10|AAA50733.2|  382|Caenorhabditis elegans Hypothetical p...    29   5.5  
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory recep...    28   9.5  
AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical...    28   9.5  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  122 bits (293), Expect = 4e-28
 Identities = 56/84 (66%), Positives = 65/84 (77%)
 Frame = +3

Query: 9   MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
           MTNSKG R GTR +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 189 TGRVYNVTAHALGVIVNKRVRGGL 260
           TGR++NVT  A+G+IVNKRVRG +
Sbjct: 61  TGRIFNVTRGAVGIIVNKRVRGNI 84



 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/78 (55%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
 Frame = +2

Query: 257 IIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH-IV 430
           I+PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P  P+ AH + 
Sbjct: 84  ILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVT 143

Query: 431 SGTEKPVLLAPIPYEFVA 484
           +   +P LLAP+ +E VA
Sbjct: 144 TQNNEPELLAPLRFEIVA 161


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 193 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 56
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 193 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 56
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 193 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 56
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 110 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 247
           Q  RHC  Q   C S  Y      W+ RSRV    +C+  +  Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411


>Z81073-9|CAB03030.2|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 529 LEGGPGTQFRPNSESVLQFTGPSFYNVVT 615
           L+  PG   +P + +V+ FT PSFY V T
Sbjct: 15  LKDQPGPSEKPRTPTVVAFTKPSFYRVNT 43


>Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 529 LEGGPGTQFRPNSESVLQFTGPSFYNVVT 615
           L+  PG   +P + +V+ FT PSFY V T
Sbjct: 15  LKDQPGPSEKPRTPTVVAFTKPSFYRVNT 43


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 386 NLKRQPAPPKAAHIVSGTE 442
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 552  LGTGPPLEXXXXXXX*KYFIGLYATNSYGIGASKTGFSVPL 430
            +GTG PL            +G  A  ++GIG +  GFS PL
Sbjct: 918  IGTGQPLPPTSVVSDSTSSLGRPAAPAFGIGRAPPGFSEPL 958


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 451 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 365
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 284 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 460
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 461 PI 466
           P+
Sbjct: 419 PV 420


>U00065-10|AAA50733.2|  382|Caenorhabditis elegans Hypothetical
           protein D1044.1 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 167 TQSIPWKDRSRVQRDCSCSRCDCQQACS-RRIIPKRINIRVEHVKHSKCRQDFLKRVKEN 343
           +  IPWK+   V  D +  R          ++ P  ++ R++ VKH+          K+N
Sbjct: 177 SDEIPWKNYENVLYDAAYIRMLHNDTLDFEKLCPAELSGRIQEVKHAFDEDGVRNSEKKN 236

Query: 344 ERL 352
           E+L
Sbjct: 237 EKL 239


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 451 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 365
           DG LS  D   + RG+WL L  +G  G +
Sbjct: 39  DGILSGVDKQENARGTWLGLNENGRIGMM 67


>U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory receptor
           family protein 5 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 227 CDCQQACSRRIIPKRINIRVEHVKHSKCR 313
           C C   CS  I P R++   +++KHS CR
Sbjct: 309 CTCA-FCSVTIAPARVHEECQNLKHSLCR 336


>AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical
           protein Y45G12C.1 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 304 GVLDMLNT-DIDALRYNPPRTRLLTITPRA*AVTLYTRPVFPWYTLCGI 161
           G+LD   T DID L+ N    +L  +     A T +T  +  W+TLC +
Sbjct: 272 GLLDYFPTFDIDDLKSNEKSLQLSAMLVYL-ARTQFTLDILKWHTLCAL 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,884,273
Number of Sequences: 27780
Number of extensions: 390384
Number of successful extensions: 1126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)