Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30398.Seq
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          119   3e-27
11_01_0155 - 1287003-1287452                                          119   3e-27
07_03_0227 - 15398371-15398925                                         29   3.6  
04_04_0445 + 25280642-25281796                                         29   3.6  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  119 bits (286), Expect = 3e-27
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +2

Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
           +G    S    IRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKF
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135

Query: 404 GGPGARARYQKSYR 445
           GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 39/79 (49%), Positives = 56/79 (70%)
 Frame = +3

Query: 18  REPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 197
           R P   VQ FGRK TA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 198 SMVXIRVTVKGGGHVAQVY 254
             + +R+ V+GGG  +Q+Y
Sbjct: 67  KDIDMRIRVRGGGKTSQIY 85


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  119 bits (286), Expect = 3e-27
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +2

Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
           +G    S    IRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKF
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135

Query: 404 GGPGARARYQKSYR 445
           GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 39/79 (49%), Positives = 56/79 (70%)
 Frame = +3

Query: 18  REPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 197
           R P   VQ FGRK TA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 198 SMVXIRVTVKGGGHVAQVY 254
             + +R+ V+GGG  +Q+Y
Sbjct: 67  KDIDMRIRVRGGGKTSQIY 85


>07_03_0227 - 15398371-15398925
          Length = 184

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 168 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRW 64
           +P +C A  W  P+   A  H  FH     C+ + RW
Sbjct: 23  LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRW 59


>04_04_0445 + 25280642-25281796
          Length = 384

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 862 GLKKWGXIXPKI*PGILTKILTLKNXPIRPFRGATFGXGQSV-RXFSLITPVGEKG 698
           GL++W     +  PG++++++ L   PI  + G   G G+   R ++    VG  G
Sbjct: 98  GLREWVGKQERFDPGVMSELVELIKRPIDRYNGDGGGGGEGEGRRYASCAVVGNSG 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,433,069
Number of Sequences: 37544
Number of extensions: 510295
Number of successful extensions: 1211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)