Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30398.Seq
         (865 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p pro...   143   2e-34
AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA...   143   2e-34
AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p pro...    29   8.3  
AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA ...    29   8.3  

>AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p
           protein.
          Length = 148

 Score =  143 bits (347), Expect = 2e-34
 Identities = 64/84 (76%), Positives = 77/84 (91%)
 Frame = +3

Query: 3   VQEARREPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLL 182
           +Q+ RREP+QAVQVFGRK TATAVAYCKRG+G+L+VNGRPL+ +EP++LQYKLQEP+LLL
Sbjct: 1   MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query: 183 GKEKFSMVXIRVTVKGGGHVAQVY 254
           GKEKF+ V IRV V GGGHVAQ+Y
Sbjct: 61  GKEKFAGVDIRVRVSGGGHVAQIY 84



 Score =  130 bits (313), Expect = 3e-30
 Identities = 60/63 (95%), Positives = 62/63 (98%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQAISKAL+AFYQKYVDEASKKEIKDILVQYDR+LLV DPRRCEPKKFGGPGARARYQK
Sbjct: 86  IRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQK 145

Query: 437 SYR 445
           SYR
Sbjct: 146 SYR 148


>AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA
           protein.
          Length = 148

 Score =  143 bits (347), Expect = 2e-34
 Identities = 64/84 (76%), Positives = 77/84 (91%)
 Frame = +3

Query: 3   VQEARREPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLL 182
           +Q+ RREP+QAVQVFGRK TATAVAYCKRG+G+L+VNGRPL+ +EP++LQYKLQEP+LLL
Sbjct: 1   MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query: 183 GKEKFSMVXIRVTVKGGGHVAQVY 254
           GKEKF+ V IRV V GGGHVAQ+Y
Sbjct: 61  GKEKFAGVDIRVRVSGGGHVAQIY 84



 Score =  130 bits (313), Expect = 3e-30
 Identities = 60/63 (95%), Positives = 62/63 (98%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQAISKAL+AFYQKYVDEASKKEIKDILVQYDR+LLV DPRRCEPKKFGGPGARARYQK
Sbjct: 86  IRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQK 145

Query: 437 SYR 445
           SYR
Sbjct: 146 SYR 148


>AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p
           protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +2

Query: 362 LLVADPRRCEPKKFGGPGARARY 430
           LL  D RR E KKFG  GAR +Y
Sbjct: 368 LLTRDYRRRERKKFGQEGARRKY 390


>AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA
           protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +2

Query: 362 LLVADPRRCEPKKFGGPGARARY 430
           LL  D RR E KKFG  GAR +Y
Sbjct: 368 LLTRDYRRRERKKFGQEGARRKY 390


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,866,751
Number of Sequences: 53049
Number of extensions: 785063
Number of successful extensions: 1606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4168047156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)