Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30398.Seq
         (865 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           119   2e-27
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   119   2e-27
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   118   4e-27
At1g43570.1 68414.m05001 hypothetical protein                          31   0.75 
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    31   0.99 

>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  119 bits (287), Expect = 2e-27
 Identities = 54/63 (85%), Positives = 61/63 (96%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQK
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 41/81 (50%), Positives = 62/81 (76%)
 Frame = +3

Query: 12  ARREPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 191
           A +   ++VQ FGRK TA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 192 KFSMVXIRVTVKGGGHVAQVY 254
           +F+ V +R+ V GGGH +QVY
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVY 82


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  119 bits (287), Expect = 2e-27
 Identities = 54/63 (85%), Positives = 61/63 (96%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQK
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score =   99 bits (238), Expect = 2e-21
 Identities = 42/81 (51%), Positives = 62/81 (76%)
 Frame = +3

Query: 12  ARREPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 191
           A +   ++VQ FGRK TA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 192 KFSMVXIRVTVKGGGHVAQVY 254
           +F+ V +R+ V GGGH +QVY
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVY 82


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  118 bits (285), Expect = 4e-27
 Identities = 55/73 (75%), Positives = 64/73 (87%)
 Frame = +2

Query: 227 GWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 406
           G  + S    IRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFG
Sbjct: 74  GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFG 133

Query: 407 GPGARARYQKSYR 445
           GPGARAR+QKSYR
Sbjct: 134 GPGARARFQKSYR 146



 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 40/75 (53%), Positives = 60/75 (80%)
 Frame = +3

Query: 30  QAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVX 209
           ++VQ FGRK TATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ V 
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 210 IRVTVKGGGHVAQVY 254
           +R+   GGG+ ++VY
Sbjct: 68  MRIRATGGGNTSRVY 82


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 387 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 280
           +R  S T + LSYC R+ LI     S T FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +3

Query: 48  GRKXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 227
           GR+  + A  + + G G  +VN +  D+  P +L ++      L   +      I+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 228 GGGHVAQV 251
           GGG   QV
Sbjct: 369 GGGTTGQV 376


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,646,112
Number of Sequences: 28952
Number of extensions: 372098
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)