Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30397.Seq
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838... 81 1e-15
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 35 0.075
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 31 1.6
02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504... 30 2.8
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 29 3.7
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376 29 4.9
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 29 6.5
05_06_0155 - 26028923-26030263 28 8.6
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 28 8.6
02_05_0078 - 25656695-25656888,25656941-25657127,25657765-256580... 28 8.6
>02_03_0030 -
14083117-14083166,14083620-14083689,14083777-14083857,
14083940-14084065,14084916-14085143,14085246-14085325,
14086567-14086768,14086857-14086946
Length = 308
Score = 81.0 bits (191), Expect = 1e-15
Identities = 33/77 (42%), Positives = 54/77 (70%)
Frame = +3
Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEEAVREVQE 434
H+K + F+RP+S+N+ L R L P++ Y ++FSNV+ I+ LA+ DE+E V++VQE
Sbjct: 66 HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQE 125
Query: 435 VFADYLAVDRHLFSFNI 485
+AD+ A+D + F+ NI
Sbjct: 126 FYADFCAIDPYHFTLNI 142
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/57 (45%), Positives = 43/57 (75%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTEESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
M +I ++ YI +M + PGMKV+++D +T +VS+VYSQS++L+KEV+L E +D+
Sbjct: 1 MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDN 56
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 35.1 bits (77), Expect = 0.075
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 258 MKCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSKADIKTLAECDEEEA-VREV 428
M I FI+PT ENI + ++ + P Y +++FS+ V + + + + A + +
Sbjct: 472 MDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGAL 531
Query: 429 QEVFADYLAVDRHLFS 476
E+ +Y A+D F+
Sbjct: 532 SEMNLEYFAIDSQGFT 547
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 589 VRYXGSLRTLALVLAGEGPAIWLEXGEXC 675
VRY GSL++ ++L GE P + GE C
Sbjct: 132 VRYIGSLQSTGIILDGESPPDFGSQGEIC 160
>02_01_0677 -
5039344-5039793,5040415-5040462,5040540-5040776,
5040862-5040898,5042474-5042491,5042801-5043153
Length = 380
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -1
Query: 569 ETGGAAQQTLRKLXGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
ET GA+++ + L G +VGS PTL+ ++ + V +HS ++S
Sbjct: 155 ETYGASEENII-LYGQSVGSGPTLDLASRLPHLRAVVLHSPILS 197
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 569 ETGGAAQQTLRKLXGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
ET GA ++ + L G +VGS PTL+ ++ + V +HS ++S
Sbjct: 141 ETYGATEENII-LYGQSVGSGPTLDLASRLPHLRAVVLHSPILS 183
>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
Length = 418
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = +3
Query: 285 TSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDE---EEAVREVQEVFADYLA 455
T ++ A+L R+ D +YG YFS + + E VRE+ + +D
Sbjct: 156 TLDSAAILFRDGFDEEYGNTINYFSKRKPPVPLSPPDPMELGFLRETVRELTSIMSDEWL 215
Query: 456 VDRHLFSFNIVGCLQGRVGTNSISXEFS 539
+ L S L VG N +S F+
Sbjct: 216 REAELSSEGTTSSLSPTVGANLVSESFA 243
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 536 KLXGDAVGSNPTLEASNNIEREQVSVHSQVVSKN--FLDLSDSLL 408
+L G+A+ +NP A IE + H+ S N +LD D LL
Sbjct: 226 QLIGEAINNNPAFLALRQIEAAREISHTMASSNNKVYLDSKDLLL 270
>05_06_0155 - 26028923-26030263
Length = 446
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +1
Query: 412 RLSERSRKFLLTTWLWTDTCSLSILLDASKVGLEPTASPXSFLKVCWAAPPVSEAGE 582
RL E SR L+ T+ W +T +L L D + V PT VC P VS +GE
Sbjct: 172 RLPE-SRGILVNTFQWLETKALRALGDGACVVGRPTP------PVCCVGPLVSRSGE 221
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 536 KLXGDAVGSNPTLEASNNIEREQVSVHSQVVSKN--FLDLSDSLL 408
+L G+A+ +NP A IE + H+ S N +LD D LL
Sbjct: 363 QLIGEAINNNPAFLALRQIEAAREISHTMARSNNKVYLDSKDLLL 407
>02_05_0078 -
25656695-25656888,25656941-25657127,25657765-25658067,
25658152-25658296,25658376-25658613,25658694-25658904,
25659060-25659175,25659420-25659468
Length = 480
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 409 RRLSE--RSRKFLLT-TWLWTDTCSLSILLDASKVGLEPTASPXSFLKVCWAAPPVSEAG 579
RR+S+ RS FL+ W+ + SL ++D S G P F+KV A
Sbjct: 238 RRMSQTIRSGMFLVRQAWMLHEQGSLLDMVDPSMKGGYPEEEALKFIKVALACTQAKPCS 297
Query: 580 EPXVR 594
P +R
Sbjct: 298 RPTMR 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,932,074
Number of Sequences: 37544
Number of extensions: 340842
Number of successful extensions: 864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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