Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30397.Seq
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    93   2e-19
U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical pr...    71   8e-13
Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine rece...    29   5.8  
AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm rece...    28   7.7  

>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 37/78 (47%), Positives = 60/78 (76%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEEAVREVQ 431
           +++KC+VF+RPT +NI  L +EL++P++  Y++YF+N ++K D+K LAE D+ E VREVQ
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETVREVQ 124

Query: 432 EVFADYLAVDRHLFSFNI 485
           EVF D + + + LF+ N+
Sbjct: 125 EVFLDGVPIRKDLFTLNL 142



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/64 (42%), Positives = 46/64 (71%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMTEESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M + +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM 252
            +N+
Sbjct: 61  SENI 64


>U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical
           protein C44C1.4b protein.
          Length = 132

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 26/59 (44%), Positives = 46/59 (77%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEEAVREV 428
           +++KC+VF+RPT +NI  L +EL++P++  Y++YF+N ++K D+K LAE D+ E + +V
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETIPKV 123



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/64 (42%), Positives = 46/64 (71%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMTEESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M + +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM 252
            +N+
Sbjct: 61  SENI 64


>Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical
           protein R09H10.2 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 388 VLMSALETTLLKYIK*TPYLGSLSSRDN-RAMFSDVGRIKTMHFMCSCYPIWHDCLSSRI 212
           V  +AL  +LL YI       S+S+    R  FSD    K      S Y  WHDCL   I
Sbjct: 8   VFFAALSISLLLYI-------SVSNTPTPRFNFSDSAVSKVW----SNYTAWHDCLMQNI 56

Query: 211 SKL 203
           SKL
Sbjct: 57  SKL 59


>U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 25 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 340 TPYLGSLSSRDNRAMFSDVGRIKTMHFMCSCYPIWH 233
           TPYL   +      +FS +  +    F C  YPIWH
Sbjct: 108 TPYLFGFNYFQFAKIFS-ISLLSANRFTCVAYPIWH 142


>AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 112 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +3

Query: 342 YFIYFSNVVSKADI----KTLAECDEEEAVREVQEVFADYLAVDRHLFSFNIVGC 494
           YF+Y     ++A +    KT  E  ++E V  +  V+  Y   +RH++  N++GC
Sbjct: 151 YFLYPDTEYTEAAVTYVLKTHYEVIKKENVSYIAYVYYQYENGERHIYIKNLLGC 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,289
Number of Sequences: 27780
Number of extensions: 301479
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)