Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30397.Seq
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77140.1 68414.m08986 vacuolar protein sorting protein 45, pu...    80   2e-15
At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putat...    36   0.027
At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE...    35   0.083
At5g14390.1 68418.m01681 expressed protein                             29   3.1  
At4g24760.1 68417.m03545 expressed protein                             29   4.1  
At3g15060.1 68416.m01905 Ras-related GTP-binding family protein ...    29   4.1  
At3g53510.1 68416.m05908 ABC transporter family protein breast c...    29   5.4  
At3g01690.1 68416.m00101 expressed protein                             28   7.2  

>At1g77140.1 68414.m08986 vacuolar protein sorting protein 45,
           putative / VPS45p, putative identical to vacuolar
           protein sorting homolog VPS45p [Arabidopsis thaliana]
           gi|2921406|gb|AAC39472
          Length = 569

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 33/77 (42%), Positives = 55/77 (71%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEEAVREVQE 434
           H+K + FIRPTS+NI  L  +L +P++G Y ++FSN++    I  LA+ DE+E V++VQE
Sbjct: 66  HLKAVYFIRPTSDNIQKLRYQLANPRFGEYHLFFSNLLKDTQIHILADSDEQEVVQQVQE 125

Query: 435 VFADYLAVDRHLFSFNI 485
            +AD+++ D + F+ N+
Sbjct: 126 YYADFVSGDPYHFTLNM 142



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 31/57 (54%), Positives = 44/57 (77%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMTEESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           M ++ +V+ YI +M ++   GMKV+++D ET S VS+VYSQSE+LQKEV+L E IDS
Sbjct: 1   MVLVTSVRDYINRMLQDIS-GMKVLILDSETVSNVSIVYSQSELLQKEVFLVEMIDS 56


>At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putative
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 662

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
 Frame = +3

Query: 258 MKCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSKADIKTL-AECDEEEAVREV 428
           M+ I FI+PT EN+     ++  + P Y   F++FS+ VS++ +  +  +    + +  +
Sbjct: 86  MEVIYFIQPTEENVTAFLSDMTGKSPLYKKAFVFFSSPVSRSLVNLIKKDMRAMKRIGGL 145

Query: 429 QEVFADYLAVDRHLFSFNIVGCLQ 500
           +E+  +Y+++D   F  N    L+
Sbjct: 146 KEMNLEYISMDIQGFVTNNENALE 169



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 127 KVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSH 234
           KV++MDK T  I+S     SEI Q+ + L E I  H
Sbjct: 44  KVLVMDKFTVKIMSSACKMSEITQEGISLVEVITKH 79


>At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE)
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 666

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +3

Query: 258 MKCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSKADIKTL-AECDEEEAVREV 428
           M  I FI+PT EN+ +   ++  + P Y   F++FS+ VSK  +  +  +      +  +
Sbjct: 86  MDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKDSSVLPRIGAL 145

Query: 429 QEVFADYLAVDRHLF 473
           +E+  ++ A+D   F
Sbjct: 146 REMNLEFFAIDSQGF 160


>At5g14390.1 68418.m01681 expressed protein
          Length = 369

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -1

Query: 569 ETGGAAQQTLRKLXGDAVGSNPTLEASNNIEREQVSV-HSQVVS 441
           ET GA Q+ +  L G +VGS PTL+ +  + + + +V HS ++S
Sbjct: 132 ETYGAKQEDII-LYGQSVGSGPTLDLAARLPQLRAAVLHSPILS 174


>At4g24760.1 68417.m03545 expressed protein
          Length = 365

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 569 ETGGAAQQTLRKLXGDAVGSNPTLEASNNIEREQVSV-HSQVVS 441
           E  GA Q+ +  L G +VGS PT++ +  + R + S+ HS ++S
Sbjct: 132 ENYGAKQENII-LYGQSVGSGPTVDLAARLPRLRASILHSPILS 174


>At3g15060.1 68416.m01905 Ras-related GTP-binding family protein
           similar to GTP-binding protein GI:303742 from [Pisum
           sativum]; contains Pfam profile: PF00071 ras family
          Length = 217

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -1

Query: 500 LEASN--NIEREQVSVHSQVVSKNFLDLSDSLLFITFGQSFDVCLRNYITEIYKV 342
           LEA N  N   E +S   +V SK  LD+ D    +  GQS +V  ++ ++E+ KV
Sbjct: 158 LEALNVENAFTEVLSQIYRVASKKALDIGDDHTTLPKGQSINVGSKDDVSEVKKV 212


>At3g53510.1 68416.m05908 ABC transporter family protein breast
           cancer resistance protein (BCRP), Homo sapiens,
           EMBL:AF098951
          Length = 739

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 176 YTILTMLVVSLSINITFIPGPLSSVILVMYILTACITFILIKLSLFISQ 30
           +TILT      S  +TF+ G +S V++   ++ A + + L+    FIS+
Sbjct: 568 FTILTAFWAGSSF-VTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISR 615


>At3g01690.1 68416.m00101 expressed protein
          Length = 361

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -1

Query: 569 ETGGAAQQTLRKLXGDAVGSNPTLEASNNI-EREQVSVHSQVVS 441
           ET G+ Q+ +  L G +VGS PTL+ ++ + +   V +HS ++S
Sbjct: 132 ETFGSKQEGVI-LYGQSVGSGPTLDLASRLPQLRAVVLHSPILS 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,432
Number of Sequences: 28952
Number of extensions: 273400
Number of successful extensions: 716
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)