Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30396.Seq
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   111   5e-25
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    29   4.3  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        29   4.3  
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    29   4.3  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    29   4.3  
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  111 bits (268), Expect = 5e-25
 Identities = 48/76 (63%), Positives = 63/76 (82%)
 Frame = +3

Query: 27  IQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ FGRK TATAVA+CK+G G+++VNGRPL+ + P +L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 207 XIRXTVKGGGHVAQVY 254
            IR  V GGGHVAQ+Y
Sbjct: 65  DIRIRVSGGGHVAQIY 80



 Score =  103 bits (247), Expect = 2e-22
 Identities = 46/63 (73%), Positives = 55/63 (87%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQK 436
           +RQA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVA PRR E KKFGGPGARARYQK
Sbjct: 82  VRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQK 141

Query: 437 SYR 445
           SYR
Sbjct: 142 SYR 144


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 236 TTTLDCXSDXNHREFFLAEQKD-RF--LKFVLQQXG 138
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 236 TTTLDCXSDXNHREFFLAEQKD-RF--LKFVLQQXG 138
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -1

Query: 242 YMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQXGXNQVQWAPVYTQHSMTTLAIRNCGG 63
           YMTT+    +  NHR + L E ++  L   +     +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 62  G 60
           G
Sbjct: 208 G 208


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -1

Query: 242 YMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQXGXNQVQWAPVYTQHSMTTLAIRNCGG 63
           YMTT+    +  NHR + L E ++  L   +     +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 62  G 60
           G
Sbjct: 208 G 208


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 302 YVDEASKKEIKDILVQYDRSLLVAXPRRCE 391
           + DE  +KE+ D+  QYDRS+ +    R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,204,189
Number of Sequences: 27780
Number of extensions: 350626
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)