Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30395.Seq
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    24   1.3  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    24   1.3  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    24   1.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.2  

>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 388 NDWRYSWSSQTVVPQIIQ 441
           +DW Y W  +  VP I++
Sbjct: 308 SDWDYFWDDEQQVPHIVK 325


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 388 NDWRYSWSSQTVVPQIIQ 441
           +DW Y W  +  VP I++
Sbjct: 309 SDWDYFWDDEQQVPHIVK 326


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 388 NDWRYSWSSQTVVPQIIQ 441
           +DW Y W  +  VP I++
Sbjct: 309 SDWDYFWDDEQQVPHIVK 326


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/70 (20%), Positives = 32/70 (45%)
 Frame = +1

Query: 388 NDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKSHPWVRDHRVHHKYSDTDADPHN 567
           +D  Y+++S     Q +    ++ +  +   +TG  ++ P  ++   HH+    D    N
Sbjct: 19  SDNYYNYTSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIIN 78

Query: 568 ASRGLFYSHI 597
              GL Y+++
Sbjct: 79  TETGLSYTNL 88


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/70 (20%), Positives = 32/70 (45%)
 Frame = +1

Query: 388 NDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKSHPWVRDHRVHHKYSDTDADPHN 567
           +D  Y+++S     Q +    ++ +  +   +TG  ++ P  ++   HH+    D    N
Sbjct: 19  SDNYYNYTSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIIN 78

Query: 568 ASRGLFYSHI 597
              GL Y+++
Sbjct: 79  TETGLSYTNL 88


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/70 (20%), Positives = 32/70 (45%)
 Frame = +1

Query: 388 NDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKSHPWVRDHRVHHKYSDTDADPHN 567
           +D  Y+++S     Q +    ++ +  +   +TG  ++ P  ++   HH+    D    N
Sbjct: 19  SDNYYNYTSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIIN 78

Query: 568 ASRGLFYSHI 597
              GL Y+++
Sbjct: 79  TETGLSYTNL 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,999
Number of Sequences: 336
Number of extensions: 4413
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)