Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30395.Seq
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    56   6e-09
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    29   0.60 
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    27   2.4  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   4.2  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    27   4.2  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   7.4  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   7.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   9.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.8  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   9.8  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 18/39 (46%), Positives = 28/39 (71%)
 Frame = +1

Query: 508 WVRDHRVHHKYSDTDADPHNASRGLFYSHIXXVVRQKTP 624
           W RDHR HH+Y+DTD DP+N  +G +Y+H+  ++  + P
Sbjct: 143 WSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP 181



 Score = 49.2 bits (112), Expect = 7e-07
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +2

Query: 362 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILL 469
           FA + Y  + +G+TAG HRLWSH++YKA+ PL+  L
Sbjct: 93  FAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFL 128


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +1

Query: 364  RVPVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKSHPWVRDHRVHHKYS 543
            +VP   + N      +S   +P+ +Q K+ S++P    S    SKS+    D        
Sbjct: 929  KVPRTSAGNHLSEKLNSDNHIPKALQ-KLDSADPIRKPSLLHTSKSYSNPDDKNTSTSDE 987

Query: 544  DTDADPHNASRGLF 585
            DT      +S GLF
Sbjct: 988  DTSESEEESSNGLF 1001


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
 Frame = -1

Query: 705 PGAETLMPGFTK-----QIXKGLLVSLSFLT 628
           PGAETL+P FT+      +  GLL +  FLT
Sbjct: 313 PGAETLLPSFTQCGINIDMPVGLLSAADFLT 343


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 498 EPPMGSRP*SPSQVQRYGRRST*RKPWALLFSYXXGCSSENTLKLRRKGKLI 653
           E   GS   + S      R+S+ ++ ++  FSY  GCS   ++ +   G+LI
Sbjct: 110 EAKTGSTSLTRSASATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVSGTGELI 161


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 KMAQNQTYNGLIVTEIEDSSLEHDSVKPSVVGPRD 256
           K+ Q+Q +NG +  ++ +   E   VK   +GP+D
Sbjct: 169 KVYQSQPWNGFVEFKVTELINESSDVKSVYLGPKD 203


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 256 YEIVYKNIFIHIYLHVTMFYGLYLC 330
           YE+ YK IFI   L+  ++  LY+C
Sbjct: 66  YEVPYKWIFIIEMLYYELYLTLYVC 90


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 478 SFTGQSKSHPWVRDHRVHHKYS 543
           SF  Q++S  W+ D R+H KY+
Sbjct: 16  SFEEQTESVSWIIDLRLHSKYA 37


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 563 ITQAVGSFILIXGWLF-VRKHPEVKKERETNRPFXICFVNPGINVSAPGI 709
           +T+AV        +L+ +  H E +K  E N PF +  V PG+     GI
Sbjct: 313 VTKAVSLDTPAAVYLYLINFHREYRKFFEENAPFSVDEVEPGLEDGKDGI 362


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +1

Query: 271 KNIFIHIYLHVTMFYGLYLCCTTAKWAFSWIRVPVLCSSNDWRYSWSSQTVVPQIIQSKI 450
           K+IF+H+ + V++ +   L C    + F    V V+   N+ +Y+   + +    + S++
Sbjct: 214 KDIFLHLCIFVSVSFATVLACILEDYKF--YGVFVITFWNNLKYNSQIENLSQHGLHSRL 271

Query: 451 T 453
           T
Sbjct: 272 T 272


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 714  FRIPGAETLMPGFTKQIXKGLLVSL-SFLTSGCFLTNNXPYMRIKEPTACVMWIC 553
            F  P  E L  G T       + S+ SF+ S CF +++  +      TAC M+ C
Sbjct: 1896 FIFPSYE-LAEGLTMMESSSFMDSIISFIDSTCFPSSSRWFQYAPSSTACQMFDC 1949


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 581 SFILIXGWLFVRKHPEVKKERETNRPF-XICFVNPGINVS 697
           S+ ++  WL  RKH E   E    R F   C +    N+S
Sbjct: 90  SYTILRSWLLSRKHIEAWIELAIRRMFYSFCAIQDDSNIS 129


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 334 TTAKWAFSWIRVPVLCSSNDWRYSWSSQTVVPQIIQSKITSS 459
           T+  +  + I  P   SS+  + SW+S T +     SK+TSS
Sbjct: 595 TSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSS 636


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +2

Query: 548 RTQIHITQAVGSFILIXGWLFVRKHPEVKKERETNRP-FXICFVNPGI 688
           R  IHI        +  GW  +RKH    K +    P F I    P I
Sbjct: 22  RNYIHIEAPFDIAAIQDGWNIIRKHIHYPKPKSIEAPMFPILLPPPNI 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,502,257
Number of Sequences: 5004
Number of extensions: 73695
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)