Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30395.Seq
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337           31   1.1  
06_02_0035 + 10816723-10819497,10819964-10820011                       30   2.5  
10_05_0050 + 8565612-8566523                                           29   4.4  
10_01_0245 + 2566400-2567584                                           29   4.4  
03_05_0821 - 27960414-27961253                                         29   5.9  
02_01_0410 + 2996779-2997888                                           29   5.9  
09_06_0319 - 22293869-22293906,22294539-22295808                       28   7.8  

>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
          Length = 386

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 317 AYIFVVRQRSGPSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLM 472
           AY + V   +  S+ F Y+ +V  TIG+      L+++       PL++LLM
Sbjct: 200 AYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEALMLFPLEMLLM 251


>06_02_0035 + 10816723-10819497,10819964-10820011
          Length = 940

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +2

Query: 341  RSGPSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQIL----LMVFLSLANQRATH 508
            R GP      L  +   +   AG+ R W    Y   + + +L    + VFLSL +++ + 
Sbjct: 860  RFGPMHMVVVLDLLGLLVAYAAGSSRDWGTSGYVVAMAVMVLAYVAIYVFLSLRDRKGSE 919

Query: 509  GFETIESITSTAI 547
            G  T E + +  I
Sbjct: 920  GRATTEMLLNFPI 932


>10_05_0050 + 8565612-8566523
          Length = 303

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +2

Query: 455 LQILLMVFLSLANQRATHGFETIESITSTAIRT 553
           +++LL+VFL LA   A      +ESITSTA++T
Sbjct: 1   MELLLLVFLLLAAMSAA-----VESITSTAVKT 28


>10_01_0245 + 2566400-2567584
          Length = 394

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +3

Query: 276 YIHTYLSTRYNVLWPISLLYDSEVGLQLDSRTCV 377
           Y+ T++   ++ L+PI+L   +E+GL + SR+C+
Sbjct: 256 YVPTHIHEDHDGLYPITLQEGTELGLIVMSRSCM 289


>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 295 LHVTMFYGLYLCCTTA-KWAFSWIRVPVLCSSNDWRYSWSSQTVV 426
           +HV M YG YLCC+   +W   W R         + +S+++  V+
Sbjct: 182 VHVAM-YGYYLCCSLGLRWPPRWKRAVTELQIAQFLFSFAASAVM 225


>02_01_0410 + 2996779-2997888
          Length = 369

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 317 AYIFVVRQRSGPSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILL 469
           AY + V   +  S+ F Y+ +V  TIG+      L+++       PL++LL
Sbjct: 183 AYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFMLFPLEMLL 233


>09_06_0319 - 22293869-22293906,22294539-22295808
          Length = 435

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 103 AWSTAPISGPGLXNTSFFHLTLKIMS 26
           AW+  PIS  GL +TSF H+  K ++
Sbjct: 185 AWTCHPISLHGLVDTSFTHINTKAIT 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,631,529
Number of Sequences: 37544
Number of extensions: 464481
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)