Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30395.Seq
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               73   4e-13

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 34/68 (50%), Positives = 43/68 (63%)
 Frame = +1

Query: 478 SFTGQSKSHPWVRDHRVHHKYSDTDADPHNASRGLFYSHIXXVVRQKTP*S*EGKGN**T 657
           S   Q+    W RDHRVHHKYS+TDADPHNA RG F+SH+  ++++K P     KG    
Sbjct: 48  SMAAQNDIFEWSRDHRVHHKYSETDADPHNAKRGFFFSHVGWLMQRKHP-DVIRKGKGID 106

Query: 658 FSDLFRKS 681
            SDL+  S
Sbjct: 107 LSDLYADS 114



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +2

Query: 395 GVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRATHGFETIESITSTAIRTQIHITQA 574
           GVT GAHRLW+H+++KA+ PL++++M+  S+A Q     +     +      T      A
Sbjct: 19  GVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHNA 78

Query: 575 V-GSFILIXGWLFVRKHPEV 631
             G F    GWL  RKHP+V
Sbjct: 79  KRGFFFSHVGWLMQRKHPDV 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,051,011
Number of Sequences: 59808
Number of extensions: 546133
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)