Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30395.Seq
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.8  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 681 GFTKQIXKGLLVSLSFLTSGCF-LTNNXPYMR-IKEP 577
           GFT +   GLL S  FL+S  F +  +  Y+R IK P
Sbjct: 292 GFTLRPAAGLLTSRDFLSSLAFRVFQSTQYIRHIKSP 328


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 700 PRYSKTFHPXWSAXGLPNNN 759
           P YS   HP W A   P  +
Sbjct: 36  PEYSDLVHPHWRAFPAPGKH 55


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 527 TLWSRTHGWLFDWPVKERP 471
           TLW R H    D P K+ P
Sbjct: 443 TLWQRAHRLGIDTPKKDGP 461


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 597 YMRIKEPTACVMWICVRIAV 538
           Y+ IK+P     W+  RIAV
Sbjct: 124 YIHIKDPLRYGRWVTRRIAV 143


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 657 GLLVSLSFLTSGCFL 613
           G+L SL  +T GCFL
Sbjct: 291 GILGSLVAITGGCFL 305


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 422 WSHKSYKARLPLQILLMVFLSLANQRATH 508
           W  K +  RLP  +L+ V   L N  A H
Sbjct: 335 WVRKIFIRRLPKLLLMRVPDDLLNDLAAH 363


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 506 GWLFDWPVKERPLVGFEEVI 447
           G LF++P+K  P   FEE I
Sbjct: 307 GRLFEFPIKFVPSYPFEEDI 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,163
Number of Sequences: 438
Number of extensions: 5070
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)