Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30395.Seq
(819 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06350.1 68414.m00671 fatty acid desaturase family protein si... 48 7e-06
At1g06120.1 68414.m00641 fatty acid desaturase family protein si... 47 2e-05
At1g06090.1 68414.m00638 fatty acid desaturase family protein si... 47 2e-05
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ... 46 3e-05
At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 46 4e-05
At1g06360.1 68414.m00672 fatty acid desaturase family protein si... 45 5e-05
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 45 7e-05
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ... 44 9e-05
At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 43 3e-04
At5g52920.1 68418.m06567 pyruvate kinase, putative similar to py... 28 6.5
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ... 28 6.5
At5g39210.1 68418.m04749 expressed protein 28 8.6
At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote... 28 8.6
At3g30560.1 68416.m03867 hypothetical protein 28 8.6
>At1g06350.1 68414.m00671 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 300
Score = 48.0 bits (109), Expect = 7e-06
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 481 FTGQSKSHPWVRDHRVHHKYSDTDADPHNASRGLFYSHIXXV 606
F Q WV HR HH+++D+D DPH+ GL +SHI +
Sbjct: 102 FALQGDPMDWVSIHRFHHQFTDSDRDPHSPKEGLLFSHILWI 143
>At1g06120.1 68414.m00641 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
by cDNA:gi_12083275_gb_AF332434.1_AF332434
Length = 299
Score = 46.8 bits (106), Expect = 2e-05
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +1
Query: 496 KSHP--WVRDHRVHHKYSDTDADPHNASRGLFYSHIXXV 606
+ HP WV HR HH+++D+D DPH+ G ++SH+ +
Sbjct: 104 QGHPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWI 142
>At1g06090.1 68414.m00638 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]
Length = 299
Score = 46.8 bits (106), Expect = 2e-05
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +1
Query: 496 KSHP--WVRDHRVHHKYSDTDADPHNASRGLFYSHIXXV 606
+ HP WV HR HH+++D+D DPH+ G ++SH+ +
Sbjct: 104 QGHPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWI 142
>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
GI:2970034 from [Arabidopsis thaliana]
Length = 305
Score = 46.0 bits (104), Expect = 3e-05
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +1
Query: 508 WVRDHRVHHKYSDTDADPHNASRGLFYSHI 597
WV HR HH+++D+D DPH+ + G ++SH+
Sbjct: 116 WVSTHRYHHQFTDSDRDPHSPNEGFWFSHL 145
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 350 PSVGFAYLCYVAATIGVTAGAHRLWSHKSYK 442
P++ A + Y +G+T HR +H+S+K
Sbjct: 62 PALRVALIVYTVGGLGITVSYHRNLAHRSFK 92
>At3g15870.1 68416.m02007 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 292
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +1
Query: 316 GLYLCCTTAKWAFSW-IRVPVLCSSNDWRYSWSSQTV-VPQIIQSKITSSNPTNGLSFTG 489
G L A W F W + + +C + + + S ++ +P+ ++ L+F G
Sbjct: 43 GSILLQLEAFWVFPWLVFINGICITLSYHRNLSHRSFDLPKWLEYLFAYGGV---LAFQG 99
Query: 490 QSKSHPWVRDHRVHHKYSDTDADPHNASRGLFYSHIXXV 606
WV +HR HHK+ +T DPH+ ++G ++SH+ +
Sbjct: 100 DPIE--WVSNHRYHHKHCETQRDPHSPTQGFWFSHMAWI 136
>At1g06360.1 68414.m00672 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 45.2 bits (102), Expect = 5e-05
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 481 FTGQSKSHPWVRDHRVHHKYSDTDADPHNASRGLFYSHIXXV 606
F Q WV HR HH+++D+D DPH+ G ++SH+ +
Sbjct: 101 FALQGDPLDWVSIHRFHHQFTDSDRDPHSPIEGFWFSHVWWI 142
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 44.8 bits (101), Expect = 7e-05
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 508 WVRDHRVHHKYSDTDADPHNASRGLFYSHIXXV 606
WV HR HH+++D+D DPH+ G ++SH+ +
Sbjct: 110 WVSIHRFHHQFTDSDRDPHSPIEGFWFSHVLWI 142
>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
[Arabidopsis thaliana]
Length = 307
Score = 44.4 bits (100), Expect = 9e-05
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 508 WVRDHRVHHKYSDTDADPHNASRGLFYSHIXXV 606
WV HR HH+++D++ DPH+ G ++SH+ +
Sbjct: 118 WVSTHRYHHQFTDSERDPHSPKEGFWFSHLLWI 150
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 368 YLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQ 496
+L Y +G+T HR +H+S+K L+ LL LA Q
Sbjct: 70 FLFYTIGGLGITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQ 112
>At3g15850.1 68416.m02005 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 371
Score = 42.7 bits (96), Expect = 3e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 508 WVRDHRVHHKYSDTDADPHNASRGLFYSHI 597
WV HR HH++ D+D DPH+ G ++SH+
Sbjct: 181 WVSTHRYHHQFCDSDRDPHSPLDGFWFSHM 210
>At5g52920.1 68418.m06567 pyruvate kinase, putative similar to
pyruvate kinase isozyme G, chloroplast precursor
[Nicotiana tabacum] SWISS-PROT:Q40546
Length = 579
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 488 PVKERPLVGFEEVILLCMICGTTVCELQL*RQSLLLHNTGTRIQL 354
P++E P++ EE+I LC G V +S+++H T TR ++
Sbjct: 357 PIEEVPILQ-EEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEV 400
>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 708
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 412 SQTVVPQIIQSKITSSNPTNGLSFTGQSKSHPWVRDHRVH 531
S P + K S N TNG G++ S PW+ H VH
Sbjct: 124 SNPTYPHTLNPKF-SVNTTNGCFTCGENTS-PWIDHHNVH 161
>At5g39210.1 68418.m04749 expressed protein
Length = 156
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 524 LWSRTHGWLFDWPVKERP--LVGFEEVILLCMICGTTVCELQL 402
L ++ GWL +WPV P L F+++ VCEL++
Sbjct: 99 LKAKLRGWLENWPVNSLPPDLARFDDLDEAVDFLVKAVCELEI 141
>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
kinase, putative leucine-rich receptor-like protein
(LRPKm1) - Malus domestica, EMBL:AF053127
Length = 967
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 370 PVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQ 492
P LC S R S +V P+ I SSNPTNG + TGQ
Sbjct: 563 PSLCGSVVNR---SCLSVHPKPIVLNPNSSNPTNGPALTGQ 600
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 602 WLFVRKHPEVKKERETNRPFXICF 673
WLF HP+ K R RP+ + F
Sbjct: 148 WLFTSDHPDAKNFRANVRPYNMLF 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,254,008
Number of Sequences: 28952
Number of extensions: 383239
Number of successful extensions: 861
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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