Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30394.Seq
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   101   2e-22
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   101   2e-22
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   5.2  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   9.2  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  101 bits (241), Expect = 2e-22
 Identities = 47/63 (74%), Positives = 54/63 (85%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQK 436
           IRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVA PRR EPKKFGG GARAR QK
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137

Query: 437 SYR 445
           SYR
Sbjct: 138 SYR 140



 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 41/76 (53%), Positives = 56/76 (73%)
 Frame = +3

Query: 27  IQAVQVFGRKXTATAVAYCKRGHGMLRVNXRPLDLXXPXLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ FG+K  ATAVA+CK G G+++VN  PL L  P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 207 XIRXTVKGGGHVAQVY 254
            IR  V GGGHV+Q+Y
Sbjct: 61  DIRVRVSGGGHVSQIY 76


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  101 bits (241), Expect = 2e-22
 Identities = 47/63 (74%), Positives = 54/63 (85%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQK 436
           IRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVA PRR EPKKFGG GARAR QK
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137

Query: 437 SYR 445
           SYR
Sbjct: 138 SYR 140



 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 41/76 (53%), Positives = 56/76 (73%)
 Frame = +3

Query: 27  IQAVQVFGRKXTATAVAYCKRGHGMLRVNXRPLDLXXPXLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ FG+K  ATAVA+CK G G+++VN  PL L  P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 207 XIRXTVKGGGHVAQVY 254
            IR  V GGGHV+Q+Y
Sbjct: 61  DIRVRVSGGGHVSQIY 76


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 229 VVVM*HKFTYQTSYFKGSDRLLPEICR 309
           V+V   KF    +Y KG+  ++P IC+
Sbjct: 766 VIVKHGKFKKMDAYVKGAPEIMPSICK 792


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 65  HRSCVLQAWSWNAACKXAPIGLXXXXTAAVQTSGTYPFARQGKIL 199
           HR+ ++++ S       +  GL    T+A  TSG+  F+ Q  IL
Sbjct: 322 HRTTLIESSSSPLRSGPSTSGLLDSFTSAFHTSGSSKFSEQDPIL 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,139
Number of Sequences: 5004
Number of extensions: 49423
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)