Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30394.Seq
         (776 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.                 122   1e-27
BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16 p...   122   1e-27
BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16 p...   122   1e-27
AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16 p...   122   1e-27
BC071674-1|AAH71674.1|  152|Homo sapiens RPS16 protein protein.       120   8e-27
AK097937-1|BAC85106.1|  178|Homo sapiens protein ( Homo sapiens ...    72   3e-12

>M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.
          Length = 146

 Score =  122 bits (295), Expect = 1e-27
 Identities = 56/63 (88%), Positives = 61/63 (96%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQK 436
           IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA PRRCE KKFGGPGARARYQK
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score =  120 bits (288), Expect = 8e-27
 Identities = 53/79 (67%), Positives = 67/79 (84%)
 Frame = +3

Query: 18  RXPIQAVQVFGRKXTATAVAYCKRGHGMLRVNXRPLDLXXPXLLQYKLQEPILLLGKEKF 197
           + P+Q+VQVFGRK TATAVA+CKRG+G+++VN RPL++  P  LQYKL EP+LLLGKE+F
Sbjct: 4   KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63

Query: 198 SMVXIRXTVKGGGHVAQVY 254
           + V IR  VKGGGHVAQ+Y
Sbjct: 64  AGVDIRVRVKGGGHVAQIY 82


>BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  122 bits (295), Expect = 1e-27
 Identities = 56/63 (88%), Positives = 61/63 (96%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQK 436
           IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA PRRCE KKFGGPGARARYQK
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score =  120 bits (288), Expect = 8e-27
 Identities = 53/79 (67%), Positives = 67/79 (84%)
 Frame = +3

Query: 18  RXPIQAVQVFGRKXTATAVAYCKRGHGMLRVNXRPLDLXXPXLLQYKLQEPILLLGKEKF 197
           + P+Q+VQVFGRK TATAVA+CKRG+G+++VN RPL++  P  LQYKL EP+LLLGKE+F
Sbjct: 4   KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63

Query: 198 SMVXIRXTVKGGGHVAQVY 254
           + V IR  VKGGGHVAQ+Y
Sbjct: 64  AGVDIRVRVKGGGHVAQIY 82


>BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  122 bits (295), Expect = 1e-27
 Identities = 56/63 (88%), Positives = 61/63 (96%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQK 436
           IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA PRRCE KKFGGPGARARYQK
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score =  120 bits (288), Expect = 8e-27
 Identities = 53/79 (67%), Positives = 67/79 (84%)
 Frame = +3

Query: 18  RXPIQAVQVFGRKXTATAVAYCKRGHGMLRVNXRPLDLXXPXLLQYKLQEPILLLGKEKF 197
           + P+Q+VQVFGRK TATAVA+CKRG+G+++VN RPL++  P  LQYKL EP+LLLGKE+F
Sbjct: 4   KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63

Query: 198 SMVXIRXTVKGGGHVAQVY 254
           + V IR  VKGGGHVAQ+Y
Sbjct: 64  AGVDIRVRVKGGGHVAQIY 82


>AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  122 bits (295), Expect = 1e-27
 Identities = 56/63 (88%), Positives = 61/63 (96%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQK 436
           IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA PRRCE KKFGGPGARARYQK
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score =  120 bits (288), Expect = 8e-27
 Identities = 53/79 (67%), Positives = 67/79 (84%)
 Frame = +3

Query: 18  RXPIQAVQVFGRKXTATAVAYCKRGHGMLRVNXRPLDLXXPXLLQYKLQEPILLLGKEKF 197
           + P+Q+VQVFGRK TATAVA+CKRG+G+++VN RPL++  P  LQYKL EP+LLLGKE+F
Sbjct: 4   KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63

Query: 198 SMVXIRXTVKGGGHVAQVY 254
           + V IR  VKGGGHVAQ+Y
Sbjct: 64  AGVDIRVRVKGGGHVAQIY 82


>BC071674-1|AAH71674.1|  152|Homo sapiens RPS16 protein protein.
          Length = 152

 Score =  120 bits (288), Expect = 8e-27
 Identities = 53/79 (67%), Positives = 67/79 (84%)
 Frame = +3

Query: 18  RXPIQAVQVFGRKXTATAVAYCKRGHGMLRVNXRPLDLXXPXLLQYKLQEPILLLGKEKF 197
           + P+Q+VQVFGRK TATAVA+CKRG+G+++VN RPL++  P  LQYKL EP+LLLGKE+F
Sbjct: 4   KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63

Query: 198 SMVXIRXTVKGGGHVAQVY 254
           + V IR  VKGGGHVAQ+Y
Sbjct: 64  AGVDIRVRVKGGGHVAQIY 82


>AK097937-1|BAC85106.1|  178|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40618 fis, clone THYMU2013089, moderately
           similar to 40S RIBOSOMAL PROTEIN S16. ).
          Length = 178

 Score = 71.7 bits (168), Expect = 3e-12
 Identities = 46/145 (31%), Positives = 63/145 (43%)
 Frame = +3

Query: 27  IQAVQVFGRKXTATAVAYCKRGHGMLRVNXRPLDLXXPXLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ+F  K  A AV  C+ G G +R+N  PL++     LQYKL E  LLL KE+ + +
Sbjct: 18  LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77

Query: 207 XIRXTVKGGGHVAQVYLSDKLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLXXXX 386
            I   VKG GHV Q+Y   +   +   P       +       T        CWW     
Sbjct: 78  DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEASEEIKDT----LTRPCWWFTPVA 133

Query: 387 XXXXXXXXXXXXXDTRNLTVKPSRK 461
                         TRN + KP +K
Sbjct: 134 MNPRNLQALVPVLTTRNHSSKPIKK 158



 Score = 36.3 bits (80), Expect = 0.12
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQ 349
           + Q ISKAL+  Y KYVDEAS +EIKD L +
Sbjct: 95  VLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,739,654
Number of Sequences: 237096
Number of extensions: 2199682
Number of successful extensions: 3508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3508
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)