Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30393.Seq
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    26   0.30 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.0  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 320 NSYL-GLSVL-NCQL--HSDLETLPVLVALAMSSPTFLGDRPRGPILGXKDDVAPTSPPT 153
           NSYL  LS+  N QL  H      PV +      P+    +   PIL  K  V+PT+PPT
Sbjct: 44  NSYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPS---PKRSSPILAEKVSVSPTTPPT 100


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 248  PQGLEGSQDHCAADSSKQTSPD 313
            P GL  ++DHC    + +  PD
Sbjct: 2266 PNGLFWNKDHCDWPENTECHPD 2287


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 389 KYQTQRQHLP*RCNRHCEDHEKQ 457
           K + Q+ H P +  RH E+ +KQ
Sbjct: 352 KRKRQKYHDPSQLLRHVEESDKQ 374


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,876
Number of Sequences: 336
Number of extensions: 3322
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)