Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30393.Seq
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 131 9e-32
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 131 9e-32
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 29 0.57
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.75
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 27 3.0
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 5.3
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 5.3
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 26 5.3
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 7.0
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 7.0
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 9.2
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 131 bits (316), Expect = 9e-32
Identities = 57/86 (66%), Positives = 78/86 (90%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51 KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110
Query: 432 GIAKIMRNRSMARYLSGSVKEILGTA 509
+A+ MR +S+A+ LSG+VKEILGTA
Sbjct: 111 EVARTMRFKSLAKELSGTVKEILGTA 136
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/51 (74%), Positives = 44/51 (86%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLXPKIGPLGLSPKKVGDDIAKATR 255
MPPKFDPNE+K + +R VGGEV S+L PKIGPLGLSPKKVG+DIAKAT+
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATK 51
Score = 33.1 bits (72), Expect = 0.035
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 512 SVGCTVEGRPPHDLIDDINSG 574
SVGCTV+G+ PHD+ +I++G
Sbjct: 138 SVGCTVDGKNPHDVQKEIDNG 158
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 131 bits (316), Expect = 9e-32
Identities = 57/86 (66%), Positives = 78/86 (90%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51 KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110
Query: 432 GIAKIMRNRSMARYLSGSVKEILGTA 509
+A+ MR +S+A+ LSG+VKEILGTA
Sbjct: 111 EVARTMRFKSLAKELSGTVKEILGTA 136
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/51 (74%), Positives = 44/51 (86%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLXPKIGPLGLSPKKVGDDIAKATR 255
MPPKFDPNE+K + +R VGGEV S+L PKIGPLGLSPKKVG+DIAKAT+
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATK 51
Score = 33.1 bits (72), Expect = 0.035
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 512 SVGCTVEGRPPHDLIDDINSG 574
SVGCTV+G+ PHD+ +I++G
Sbjct: 138 SVGCTVDGKNPHDVQKEIDNG 158
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 29.1 bits (62), Expect = 0.57
Identities = 19/85 (22%), Positives = 36/85 (42%)
Frame = +3
Query: 270 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 449
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 450 RNRSMARYLSGSVKEILGTASQLDV 524
RNR L +V I ++D+
Sbjct: 83 RNRKARENLKVNVSSIGEVLPEIDL 107
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.75
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 505 VPRISFTEPERYRAIDLFLMIFAMPI-TSSREMLPL 401
V R+ ++PE DLFL I A+ + TSS+ +LPL
Sbjct: 1475 VKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 503 HSQSVGCTVEGRPP 544
H +SVGC VEG PP
Sbjct: 17 HCKSVGCIVEGCPP 30
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 404 RQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 496
+ H+ +C HC H + PVP +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = +2
Query: 398 TQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRD--SW-HSQSVGC 523
T+ H P + HC H + PVP +K D W H + C
Sbjct: 216 TKPDHKPWKHEEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCSC 260
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 398 TQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 496
T+ H P + HC H + + PVP +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 383 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 276
+FT+ R LK + CR N + GLS C +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 25.8 bits (54), Expect = 5.3
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 342 IIRALKEPPRD-RKKQKNIKH-NGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAS 512
I+R +KE + RK +K + G+IS DVI ++ + YL KE+LG AS
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEAS 112
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 511 LAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIF 389
L+ PR T +R + + + P TSSR LPL +++
Sbjct: 221 LSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 269 ETLPVLVALAMSSPTFLGDRPRGPILGXKDDVAP 168
E +PV ++ SP L D R +L ++AP
Sbjct: 1017 ELIPVFASVLTGSPEQLNDELRSELLSMVKEIAP 1050
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 182 DDVAPTSPPTHRKFTILI 129
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,749
Number of Sequences: 5004
Number of extensions: 52674
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -