Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30393.Seq
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 142 2e-34
02_05_0416 + 28791512-28792012 139 2e-33
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 31 1.0
11_06_0546 + 24853167-24853880 29 4.1
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 29 4.1
03_06_0776 - 36176390-36177589 29 4.1
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 28 7.2
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 7.2
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 28 7.2
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 27 9.5
07_03_0574 - 19629875-19631032 27 9.5
>04_04_1026 + 30214437-30214937
Length = 166
Score = 142 bits (345), Expect = 2e-34
Identities = 66/85 (77%), Positives = 81/85 (95%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI
Sbjct: 52 KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
IA+IMRNRSMA+ ++G+VKEILGT
Sbjct: 112 EIARIMRNRSMAKEMAGTVKEILGT 136
Score = 77.8 bits (183), Expect = 7e-15
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLXPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP ++ V +R GGEVGA SSL PKIGPLGLSPKK+G+DIAK T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET 50
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 512 SVGCTVEGRPPHDLIDDINSG 574
SVGCTV+G+ P DL +I+ G
Sbjct: 139 SVGCTVDGKDPKDLQQEISDG 159
>02_05_0416 + 28791512-28792012
Length = 166
Score = 139 bits (336), Expect = 2e-33
Identities = 64/85 (75%), Positives = 80/85 (94%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI
Sbjct: 52 KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
IA++MR RSMA+ ++G+VKEILGT
Sbjct: 112 EIARVMRPRSMAKEMAGTVKEILGT 136
Score = 77.8 bits (183), Expect = 7e-15
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLXPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP ++ V +R GGEVGA SSL PKIGPLGLSPKK+G+DIAK T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET 50
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 512 SVGCTVEGRPPHDLIDDINSG 574
SVGCTV+G+ P DL +I+ G
Sbjct: 139 SVGCTVDGKDPKDLQQEISDG 159
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 240 CQGHKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 386
C W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 27 CAAQGYWYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>11_06_0546 + 24853167-24853880
Length = 237
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 600 KHLFINGQTPLLMSSIRSCGGLPS-TVHPTDWLCQESLLLSQK 475
KHL +NG LL+SS+ + + T+H T WL + +L + K
Sbjct: 38 KHLELNGNKSLLLSSLENAKNISKVTLHST-WLDRANLQILAK 79
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 256 SLWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 146
S+W C H P+ E D E R GP L R I+
Sbjct: 1181 SMWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 384 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 473
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 389 KYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSW 502
K+ + LP RCN+ C + + P PF S+ W
Sbjct: 145 KWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLW 182
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 100 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLXPKIGPLGLSPKKV 228
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 120 VKLRGHFVDYLVQLYTIITLNPNGWVWIPQ 31
V LR H L L + +P W+WI Q
Sbjct: 81 VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 357 KEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTASQLDVLWRA 536
K D +K K GN+ E + + +I++ R+ L G V E+ ++ LW
Sbjct: 291 KREMSDEEKHKLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWEL 350
Query: 537 GRHMI 551
R ++
Sbjct: 351 DRFVV 355
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 436 MPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 308
+P E++P C ++F F R+ G SL A + AA +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,898,328
Number of Sequences: 37544
Number of extensions: 383262
Number of successful extensions: 1025
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -