Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30393.Seq
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 128 3e-30
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 37 0.011
Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical pr... 32 0.40
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 30 1.2
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.2
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.2
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.2
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 30 1.2
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 30 1.2
AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine r... 27 8.6
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 128 bits (310), Expect = 3e-30
Identities = 58/89 (65%), Positives = 77/89 (86%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
+DWKGLK+T +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I
Sbjct: 51 QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTII 110
Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASQL 518
IA+IMR RSMA+ L G+VKEILGTA +
Sbjct: 111 KIARIMRPRSMAKKLEGTVKEILGTAQSV 139
Score = 98.3 bits (234), Expect = 4e-21
Identities = 44/60 (73%), Positives = 51/60 (85%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLXPKIGPLGLSPKKVGDDIAKATRTGRVSRSLC 282
MPPKFDP EIKIV LRCVGGEVGATS+L PK+GPLGLSPKK+G+DIAKAT+ + + C
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +2
Query: 506 SQSVGCTVEGRPPHDLIDDINSG 574
+QSVGCT++G+ PHD+I+ I +G
Sbjct: 136 AQSVGCTIDGQHPHDIIESIANG 158
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +2
Query: 506 SQSVGCTVEGRPPHDLIDDINSG 574
+QSVGCT++G+ PHD+I+ I +G
Sbjct: 21 AQSVGCTIDGQHPHDIIESIANG 43
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +3
Query: 447 MRNRSMARYLSGSVKEILGTASQL 518
MR RSMA+ L G+VKEILGTA +
Sbjct: 1 MRPRSMAKKLEGTVKEILGTAQSV 24
>Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical
protein Y49E10.4 protein.
Length = 436
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 117 KLRGHFVDYLVQLYTIITLNPNGWVWIPQGYRLNVQR 7
K R +D L +L TI GWVW+ G + NVQR
Sbjct: 305 KCRKQKIDMLNELATIFKKRSFGWVWMEGGAQENVQR 341
>Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical
protein B0464.6 protein.
Length = 643
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 354 LKEPPRDRKKQKNIKH-NGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTASQLDVLW 530
L++ P KK + N+S+ D GI + + + + G E + T QLDVL
Sbjct: 184 LQQSPSPNKKSPSYSQVMSNVSVSDTSGILEDTKGGWKSPAVYGKSNESIHTRKQLDVLL 243
Query: 531 RAGRHMILLMTSTAEF 578
R+ + I + +T+ F
Sbjct: 244 RSNQDEIPVDMNTSTF 259
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine
receptor, class x protein12 protein.
Length = 305
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/31 (25%), Positives = 14/31 (45%)
Frame = -2
Query: 129 FIWVKLRGHFVDYLVQLYTIITLNPNGWVWI 37
F+W GH + Y + + +P W W+
Sbjct: 131 FVWSMAIGHVIPYFWRETCYVAYDPVSWTWV 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,588,388
Number of Sequences: 27780
Number of extensions: 305784
Number of successful extensions: 782
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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