Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30393.Seq
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   139   1e-33
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   135   3e-32
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           135   3e-32
At2g31890.1 68415.m03896 expressed protein                             28   4.5  
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p...    28   4.5  
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote...    28   6.0  
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c...    28   6.0  
At3g57760.1 68416.m06434 protein kinase family protein contains ...    27   7.9  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  139 bits (337), Expect = 1e-33
 Identities = 66/85 (77%), Positives = 78/85 (91%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVI 111

Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
            IAKIMR RS+A+ LSG+VKEILGT
Sbjct: 112 EIAKIMRPRSIAKELSGTVKEILGT 136



 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 35/50 (70%), Positives = 41/50 (82%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLXPKIGPLGLSPKKVGDDIAKAT 252
           MPPK DP++I  V +R  GGEVGA SSL PKIGPLGL+PKK+G+DIAK T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50



 Score = 35.5 bits (78), Expect = 0.030
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 512 SVGCTVEGRPPHDLIDDINSG 574
           SVGCTV+G+ P DL ++INSG
Sbjct: 139 SVGCTVDGKDPKDLQEEINSG 159


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  135 bits (326), Expect = 3e-32
 Identities = 63/85 (74%), Positives = 77/85 (90%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV 
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111

Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
            IA+IMR RS+A+ LSG+V+EILGT
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT 136



 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 35/50 (70%), Positives = 41/50 (82%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLXPKIGPLGLSPKKVGDDIAKAT 252
           MPPK DP++I  V +R  GGEVGA SSL PKIGPLGL+PKK+G+DIAK T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50



 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 512 SVGCTVEGRPPHDLIDDINSG 574
           SVGCTV+G+ P DL  +I  G
Sbjct: 139 SVGCTVDGKDPKDLQQEIQEG 159


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  135 bits (326), Expect = 3e-32
 Identities = 63/85 (74%), Positives = 77/85 (90%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV 
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111

Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
            IA+IMR RS+A+ LSG+V+EILGT
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT 136



 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 35/50 (70%), Positives = 41/50 (82%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLXPKIGPLGLSPKKVGDDIAKAT 252
           MPPK DP++I  V +R  GGEVGA SSL PKIGPLGL+PKK+G+DIAK T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 512 SVGCTVEGRPPHDLIDDINSG 574
           SVGCTV+G+ P D+  +I  G
Sbjct: 139 SVGCTVDGKDPKDIQQEIQDG 159


>At2g31890.1 68415.m03896 expressed protein
          Length = 671

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 360 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 467
           +PP+ RKKQKN K     +LED  G+   +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142


>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
           putative / ADP, ATP translocase, putative / adenine
           nucleotide translocase, putative strong similarity to
           SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
           chloroplast precursor (ADP/ATP translocase 1) (Adenine
           nucleotide translocase 1) {Arabidopsis thaliana};
           contains Pfam profile PF03219: TLC ATP/ADP transporter
          Length = 618

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 445 IFAMPITSSREMLPLCLIFFCFL 377
           IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124


>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 receptor type
           precursor, Oryza sativa, PIR:A57676
          Length = 1025

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 481 PERYRAIDLFLMIFAMPITSSREMLPLCLIFFCFLRSRGGSLRA 350
           P R+ ++   + I    + ++  +L LC+++ C+ + R  S+RA
Sbjct: 645 PRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRA 688


>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to DEAD box
           protein DDX1 [Gallus gallus] GI:16323037,  ryanodine
           receptor [Caenorhabditis elegans] GI:1871447; contains
           Pfam profile PF00622: SPRY domain
          Length = 509

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 249 HKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNI 413
           HK  K L     + V+  +    V+PS A ++  A        KK K+ K N N+
Sbjct: 172 HKKLKQLDCLTSVAVKEEEEPEQVLPSEAMVVEEAATLVASAAKKSKSKKKNNNV 226


>At3g57760.1 68416.m06434 protein kinase family protein contains
           similarity to protein kinases
          Length = 378

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
 Frame = +3

Query: 369 RDRKKQKNIKHNGNISLEDVI----GIAKIMRNRSMARYLSGSVKEILGT-ASQLDVLWR 533
           R +K+++N+K NG + L+++I    G    ++N S  + +  +        AS++DV +R
Sbjct: 10  RAKKRKRNVKENGEVVLKELIECCDGKCNPIKNFSYDQIIKATNNFCQSNRASRIDVYYR 69

Query: 534 AGRHMI 551
             + M+
Sbjct: 70  CYKGML 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,088
Number of Sequences: 28952
Number of extensions: 293021
Number of successful extensions: 709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)