Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30391.Seq
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627... 31 1.4
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 30 2.5
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66... 30 2.5
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 29 3.3
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595 29 4.4
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818 29 4.4
03_05_0817 - 27939192-27939584,27940806-27941561 29 5.8
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794... 28 7.6
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803... 28 7.6
>02_05_1314 -
35661824-35661912,35662031-35662454,35662689-35662787,
35662886-35662995,35663263-35663516,35664080-35664098,
35664834-35665075,35665662-35666401
Length = 658
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/71 (35%), Positives = 31/71 (43%)
Frame = -1
Query: 769 LFPNXXGEPXPXPSLSELNXXHRFLPRARNLRVGXQRLPSNXQKEPGPAAVPSRRLTRLS 590
+ P G P P PSL+ + FLP L + +R P+ K AA P RR LS
Sbjct: 1 MLPPSAGTPLPPPSLAAASTSSCFLPSL--LPIRRRRWPT--PKATATAAFPPRRPAPLS 56
Query: 589 WWTRDALHXPG 557
LH PG
Sbjct: 57 -ANNLPLHTPG 66
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 186 RSS*CVKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKET-QNVKSQDIKS 362
RSS KS GEG + E + + + K +P P K T+ + K + + V+ + +S
Sbjct: 73 RSSSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRS 132
Query: 363 GEQQKGKGPA 392
K K A
Sbjct: 133 PSPTKAKALA 142
>08_01_0091 +
664913-664985,665281-665576,667197-667311,667901-667971
Length = 184
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 111 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKENKGKPEPK 284
Q+ G FL G E+ RS + + SA R GE A+ +D+ +R +GK
Sbjct: 20 QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79
Query: 285 PAKGVTVPT 311
G T PT
Sbjct: 80 SNPGET-PT 87
>06_01_1202 +
10389090-10389140,10389218-10389853,10390355-10390439,
10390536-10390654,10391251-10391318,10391401-10391710
Length = 422
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 355 GKGKGKKDEKEDKDKKIKRKPSPTVQATTPPAKRRKNNE 393
>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
Length = 216
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186
>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
Length = 216
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186
>03_05_0817 - 27939192-27939584,27940806-27941561
Length = 382
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 456 GTAENKEGAPXPPRREFGIRRA*LQRAPQF*RQQPGXCRASRVH 587
G E KEGAP PR E IRR + R P + R R+H
Sbjct: 83 GDGEEKEGAPLLPREEV-IRRLRVLRQPATLFGEDDAARLRRLH 125
>12_02_0580 +
20776820-20777247,20777341-20778109,20779280-20779447,
20779877-20780236
Length = 574
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 727 LSELNXXHRFLPRARNLRVGX-QRLPSNXQKEPGPAAVPSRRLTRLSWWTRDALHXPGC 554
L +L H P R LRVG LP + +PG A V + RL L+W D L C
Sbjct: 294 LPDLRRLHVDAPGLRLLRVGHCDNLPYSD--DPGAARVSAPRLETLAW---DGLEYRAC 347
>01_06_0735 -
31579201-31579208,31579402-31579467,31580222-31580307,
31580396-31580430,31580586-31580669,31580754-31580843,
31581267-31581304,31582042-31582108
Length = 157
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/46 (21%), Positives = 27/46 (58%)
Frame = +3
Query: 231 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGE 368
+ E++ S E++GK + K +G+ + + +N+K++++ G+
Sbjct: 51 ESEEEESEDESEGKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGK 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,048,662
Number of Sequences: 37544
Number of extensions: 364350
Number of successful extensions: 912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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