Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30391.Seq
         (811 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    30   0.073
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    29   0.17 
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    26   1.6  
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    24   4.8  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    24   4.8  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    24   4.8  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    24   6.4  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.073
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 410 ITIDRACRSLTLLLFSTFDVLRLHILSFLNALPGGNGYAFSGL 282
           +   + C  + ++LFST+D + L+   +LN + G NG   S +
Sbjct: 4   VITSKVCALIFIILFSTYDSVVLYPEEYLNIILGPNGTGKSAI 46


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQKGKG 386
           A EGA K  ++    ++G+P PKP + +T  T++ + +     + ++    QQ G G
Sbjct: 130 AAEGAPKPQRKL--SDRGEPPPKPDRRITTTTQQIVVKLPETVA-NVSLEHQQSGAG 183


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 350 LRLHILSFLNALPGGNGYAFSGLGFR 273
           LRLH + F++    G GYAF    F+
Sbjct: 774 LRLHWVEFMSKFYEGLGYAFKPFSFK 799


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 228 AQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQN 338
           AQ +D++ R  N+G+  P+P   + +P    +K+ ++
Sbjct: 89  AQTQDEQ-RALNEGEVPPEPVANIHIPKLSELKDLKH 124


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 228 AQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQN 338
           AQ +D++ R  N+G+  P+P   + +P    +K+ ++
Sbjct: 89  AQTQDEQ-RALNEGEVPPEPVANIHIPKLSELKDLKH 124


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 350 LRLHILSFLNALPGGNGYAFSGLGFR 273
           LRLH + F++    G GY F    F+
Sbjct: 814 LRLHWVEFMSKFYEGLGYGFQPFSFK 839


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +3

Query: 225 GAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQKGKGPA 392
           G Q+   R+R E + +   +         ++ IK +++   QD+    +  G GPA
Sbjct: 303 GMQRRFNRARTEEQREERRQIKSDARAALQQAIKLSKDQHKQDLPEQLEPHGFGPA 358


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,043
Number of Sequences: 2352
Number of extensions: 12289
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)