Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30391.Seq
(811 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical p... 29 5.2
EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein. 29 5.2
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 5.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 5.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 5.2
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 28 6.9
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 28 6.9
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 28 6.9
Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical pr... 28 9.1
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ... 28 9.1
>Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSQDIKSGEQQK 377
+K A E ++K+D++ +KE + K TV +K E K + IK G K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695
>Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSQDIKSGEQQK 377
+K A E ++K+D++ +KE + K TV +K E K + IK G K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695
>Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSQDIKSGEQQK 377
+K A E ++K+D++ +KE + K TV +K E K + IK G K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695
>EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein.
Length = 715
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSQDIKSGEQQK 377
+K A E ++K+D++ +KE + K TV +K E K + IK G K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 249 SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQK 377
++KE +GKPE K K T I ET ++D+ +Q +
Sbjct: 9171 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9213
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 249 SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQK 377
++KE +GKPE K K T I ET ++D+ +Q +
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 249 SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQK 377
++KE +GKPE K K T I ET ++D+ +Q +
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 702 GFCXEPGIXGSEXN-VCPLIXKKNPAPXRSLHGGSRGCLGGP 580
G +PG+ G+ N CPL + P P R G G G P
Sbjct: 125 GNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGPPGIKGWP 166
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 702 GFCXEPGIXGSEXN-VCPLIXKKNPAPXRSLHGGSRGCLGGP 580
G +PG+ G+ N CPL + P P R G G G P
Sbjct: 162 GNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGPPGIKGWP 203
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 702 GFCXEPGIXGSEXN-VCPLIXKKNPAPXRSLHGGSRGCLGGP 580
G +PG+ G+ N CPL + P P R G G G P
Sbjct: 146 GNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGPPGIKGWP 187
>Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical
protein F28D1.8 protein.
Length = 360
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
K + AG+G K+ + KE KG + + K + PT+K
Sbjct: 321 KKSGAGKGKGKKKSKVSKEKKGGKKVQKKKPASKPTKK 358
>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
protein Y73F8A.5 protein.
Length = 1019
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 427 RVVVKIGRRTVPQKTRKELRXHRD 498
RV+ GRR+ P +R LR HR+
Sbjct: 983 RVIFSKGRRSAPNNSRTTLRDHRE 1006
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,004
Number of Sequences: 27780
Number of extensions: 287665
Number of successful extensions: 732
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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