Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30391.Seq
         (811 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             31   0.68 
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    29   3.7  
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso...    29   4.8  
At3g10680.1 68416.m01284 heat shock protein-related contains wea...    28   8.4  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKG-KPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQK 377
           E  Q   + S K  KG K E K AK V     K +  T+N      +SGE  K
Sbjct: 773 ENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNK 825


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
            protein contains InterPro entry IPR000504: RNA-binding
            region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 147  SSEQIRSFLGR*DRSS*CVKSARAGE--GAQKEDQRSR-KENKGKPEPKPAKGVTVPTRK 317
            S E+ +S +   D ++   +  R  E   + K+ Q  R KE   KP+PK +K ++ P ++
Sbjct: 877  SKEEAKSNIAVKDNAAEKKRPIRTQEKPSSNKKGQLMRQKETTEKPDPKISKDLSEPRKR 936

Query: 318  GIKETQNVKSQDIKSGEQQKGKG 386
               E +  ++++ +   +++G+G
Sbjct: 937  KFGEDRGEENRNGQRKRKKQGQG 959


>At4g37820.1 68417.m05351 expressed protein Kaposi's
           sarcoma-associated herpes-like virus ORF73gene, Kaposi's
           sarcoma-associated herpesvirus, U52064
          Length = 532

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKGK-PEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQKGK 383
           E  +KED  S++E+K + PE K  +  +      IKET+  + ++  S E  + K
Sbjct: 354 EKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKETEIKEKEESSSQEGNENK 408


>At3g10680.1 68416.m01284 heat shock protein-related contains weak
           similarity to Pfam profile PF00011: Hsp20/alpha
           crystallin family
          Length = 490

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKS 362
           K  +A +  +K  QRS +E  G P P    G T+  +K ++E + V +   K+
Sbjct: 116 KQEKAVQDQEKIGQRSNQEKSGGPGP---NGSTLGRKKALEEEKQVGTSQEKT 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,043
Number of Sequences: 28952
Number of extensions: 267504
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)