Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30390.Seq
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    31   0.26 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.3  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   4.3  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    27   4.3  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   10.0 

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 407 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVY 508
           + E+KY EAI  YT AI L   SAL   ++ R   Y
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATY 69


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 419 KYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQM 529
           +Y +A++ Y+ AI+LNP  + ++   G +Y +  NQ+
Sbjct: 633 QYQDALDAYSRAIRLNPYISEVWYDLGTLYESCHNQI 669


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 400 ESILGTKIRRSY*SIYCSHTIKSTECFVVC*TGTGVLKLNKPNACIKDCTHALE 561
           ES L     RS  ++YCS  +    C + C +    L +N+ +A  K    ALE
Sbjct: 195 ESFLFEYFHRSNDNMYCSEHLIYALCAIGCRSSEDSLLVNQADAFYKMAWDALE 248


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 508 LKLNKPNACIKDCTHALELN 567
           LK+  P  CI+DC  A+EL+
Sbjct: 444 LKVMAPAECIRDCNKAIELD 463


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 185
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,195
Number of Sequences: 5004
Number of extensions: 62661
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)