Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30390.Seq
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 46   5e-05
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.16 

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +1

Query: 508 LKLNKPNACIKDCTHALELNCDSACLTNSEG---EHIGSWVN-XKNLPTILVNL*RFDYD 675
           +++ KPNA I+DC  A ++N DSA +    G   E +G W    K+L   L    + D+D
Sbjct: 93  IRMKKPNAAIRDCDKAAQINPDSAQIYKWRGRAHEFLGHWEKADKDLAQAL----KLDFD 148

Query: 676 VPTNEWLNEVKTK 714
              NEW  +V  K
Sbjct: 149 EQVNEWFKDVHPK 161



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
 Frame = +2

Query: 257 EPESD---VELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQ--- 418
           +PES+    ++D  GVI PD  DE   MGD +                            
Sbjct: 3   KPESEKGVFDIDQTGVIEPD-VDEPVPMGDDSIESPLASLVMTFWLSVTGREKSGGSDTL 61

Query: 419 -KYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
              +EAI L+T AI  NP SA LFAKR   +
Sbjct: 62  GNLEEAIKLFTDAIMKNPHSAPLFAKRASCF 92


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQV 505
           AF +QKY+EA+ LYT A+  +  +   +  R Q+
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTNRAQL 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,053,911
Number of Sequences: 59808
Number of extensions: 465970
Number of successful extensions: 983
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)