Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30388.Seq
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 105 4e-24
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 27 0.93
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 27 1.2
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.6
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ... 26 2.9
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 2.9
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 6.6
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 6.6
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 24 8.7
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 24 8.7
>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 105 bits (251), Expect = 4e-24
Identities = 46/68 (67%), Positives = 58/68 (85%)
Frame = +1
Query: 49 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 228
KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI FA+K M T ++RVD LNK +W
Sbjct: 6 KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65
Query: 229 SKGVRNVP 252
+G+RNVP
Sbjct: 66 KRGIRNVP 73
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 27.5 bits (58), Expect = 0.93
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -2
Query: 197 RMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAI 18
R+ +P+ F R+ +G L PT R+ K Y TS M L +S LGL +
Sbjct: 45 RLIHIPLSFLQQPRVIAEIIGGIVLGPTVMGRIPKFLDYI-FPTSSMGPLNLVSNLGLVL 103
Query: 17 VI 12
+
Sbjct: 104 FL 105
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 222 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 100
E V S+Y N R +L ++ CSW + +S+T S+
Sbjct: 68 EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 424 VFFFFFYTKGVYSWLASTFSVCKPLID 344
+FFF +Y K ++++ FS+ K L++
Sbjct: 73 IFFFVYYCKQALEFISTVFSIIKFLLN 99
>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 273 KASHGHEGNISDSLRP-KEFV*ASVYSNVRSSHLFFS 166
K G +G+ISD LRP KE V A S+HL +
Sbjct: 155 KLRPGSQGDISDVLRPGKEMVAAGYTMYGASAHLLLT 191
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 2.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 397 GVYSWLASTFSVCKPLID 344
GV WLAST+S C +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 58 INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 156
INE VT +Y N+ + G+G ++A +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 6.6
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 242 LTPL-DQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 120
L P+ DQ L R+ R SG +C+S F L + N
Sbjct: 22 LAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRN 63
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 86 VYSRVTTSFMADLPFLSPLGLAIVILS 6
V+ +TSF D+ FLS L LA+ L+
Sbjct: 1237 VFYEESTSFALDVDFLSSLQLAVESLT 1263
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 342 QQARKSLV*ITYVRNLHHHYVFVKASH 262
++A+KSL + R + HYVFV H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,536
Number of Sequences: 5004
Number of extensions: 29035
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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