Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30388.Seq
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      112   1e-25
08_02_1181 - 24985963-24986242,24987109-24987197                      109   9e-25
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     91   3e-19
03_03_0179 - 15148688-15149251                                         29   2.1  
01_03_0147 - 13125065-13126679,13126802-13127664                       28   3.7  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   6.4  
03_02_0178 + 6195402-6199158,6199438-6200003                           27   8.5  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  112 bits (270), Expect = 1e-25
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = +1

Query: 31  KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 210
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 211 LNKFLWSKGVRNVP 252
           LNK +WS G+R+VP
Sbjct: 64  LNKHIWSSGIRSVP 77



 Score = 30.3 bits (65), Expect = 0.69
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +3

Query: 285 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 377
           ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 89  NDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  109 bits (262), Expect = 9e-25
 Identities = 50/73 (68%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
 Frame = +1

Query: 37  ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 213
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62

Query: 214 NKFLWSKGVRNVP 252
           NK +WS G+R+VP
Sbjct: 63  NKHIWSSGIRSVP 75



 Score = 31.9 bits (69), Expect = 0.23
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +3

Query: 285 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 377
           ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 87  NDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 46/80 (57%), Positives = 56/80 (70%), Gaps = 16/80 (20%)
 Frame = +1

Query: 61  NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 192
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72

Query: 193 IRVDTRLNKFLWSKGVRNVP 252
           IR+D +LNK +W+ G+R+VP
Sbjct: 73  IRIDVKLNKAIWTNGIRSVP 92



 Score = 30.7 bits (66), Expect = 0.52
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +3

Query: 285 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 377
           ND+ED+  +L++LVT   +P   +KGL T+ V+
Sbjct: 104 NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136


>03_03_0179 - 15148688-15149251
          Length = 187

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -1

Query: 306 VRNLHHHYVFVKASHGHEGNIS----DSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDCS 139
           +R+LH   V+   S GHE +I        RP  F   S+ ++V + H F     +  D S
Sbjct: 48  IRSLHRPTVYGHYSTGHEDSIEAYFHSCRRPVPFFLPSLPASVSTGHDFLRSYREILD-S 106

Query: 138 WGTL 127
            GTL
Sbjct: 107 CGTL 110


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 260 DTKGTFLTPLDQRNLFKRVSTRMSGVPICFS 168
           +T  ++LT L  RNL + +  R +G P C++
Sbjct: 477 ETARSYLTDLISRNLIQALHLRHNGTPSCYT 507


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 88  VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 192
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   TKLKITMAKPKGERKGKSAINEVVTREYTVNL 96
           T L + M KP  E KGK    +V+++E  + +
Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,751,027
Number of Sequences: 37544
Number of extensions: 167974
Number of successful extensions: 375
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)