Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30388.Seq
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...   121   3e-28
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    49   2e-06
Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical p...    26   10.0 
Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical p...    26   10.0 
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    26   10.0 
AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like p...    26   10.0 
AC024860-2|AAN84888.1|  173|Caenorhabditis elegans Hypothetical ...    26   10.0 

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score =  121 bits (291), Expect = 3e-28
 Identities = 51/76 (67%), Positives = 66/76 (86%)
 Frame = +1

Query: 28  PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDT 207
           PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62

Query: 208 RLNKFLWSKGVRNVPF 255
           +LNKF+WSKG++NVP+
Sbjct: 63  KLNKFIWSKGIKNVPY 78



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +3

Query: 285 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 386
           N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 89  NEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 18/26 (69%), Positives = 24/26 (92%)
 Frame = +1

Query: 178 MGTPDIRVDTRLNKFLWSKGVRNVPF 255
           M T D+RVDT+LNKF+WSKG++NVP+
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVPY 26



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +3

Query: 285 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 386
           N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 37  NEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70


>Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical
           protein JC8.12b protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 312 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 404
           L+T+  ++ VAS +G+   N D+ +  TP++
Sbjct: 70  LYTISQWITVASFEGIAMPNFDSVKRLTPIL 100


>Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical
           protein JC8.12a protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 312 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 404
           L+T+  ++ VAS +G+   N D+ +  TP++
Sbjct: 81  LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +1

Query: 28  PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRA---IKEIRKF-AEKQMGTPDI 195
           PK E +  + I E + R Y++   +RL  +     APRA    +  R+F A K+M   + 
Sbjct: 71  PKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEA 130

Query: 196 RVDTRLNKFLWSKGVRNVP 252
            ++ + N+ L ++G+   P
Sbjct: 131 SIEEQRNR-LMAEGIAVPP 148


>AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like
           protein protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 312 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 404
           L+T+  ++ VAS +G+   N D+ +  TP++
Sbjct: 81  LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111


>AC024860-2|AAN84888.1|  173|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.3 protein.
          Length = 173

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 109 HGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 201
           + V  K + P+ I++IRKF +  + +PD  V
Sbjct: 126 YNVDSKIKQPQVIEDIRKFVKIHVDSPDSEV 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,750,082
Number of Sequences: 27780
Number of extensions: 162606
Number of successful extensions: 397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)