Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30388.Seq
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...   109   6e-25
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)           107   3e-24
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)           106   6e-24
At4g17250.1 68417.m02594 expressed protein                             28   2.3  
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse...    28   2.3  
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse...    28   2.3  
At3g51220.1 68416.m05607 expressed protein contains Pfam doamin ...    27   4.1  
At1g32900.1 68414.m04053 starch synthase, putative similar to st...    27   5.4  
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ...    26   9.4  
At2g38300.1 68415.m04705 myb family transcription factor               26   9.4  

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score =  109 bits (263), Expect = 6e-25
 Identities = 49/72 (68%), Positives = 60/72 (83%)
 Frame = +1

Query: 37  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 216
           E+KG+    EVVTREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK+MGT D+RVD +LN
Sbjct: 3   EKKGRK--EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60

Query: 217 KFLWSKGVRNVP 252
           K +WSKG+R  P
Sbjct: 61  KQIWSKGIRGPP 72



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 285 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 377
           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 84  NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score =  107 bits (257), Expect = 3e-24
 Identities = 48/72 (66%), Positives = 59/72 (81%)
 Frame = +1

Query: 37  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 216
           E+KG+    EV+TREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK MGT D+RVD +LN
Sbjct: 3   EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60

Query: 217 KFLWSKGVRNVP 252
           K +WSKG+R  P
Sbjct: 61  KQIWSKGIRGPP 72



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 285 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 377
           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 84  NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score =  106 bits (255), Expect = 6e-24
 Identities = 48/70 (68%), Positives = 55/70 (78%)
 Frame = +1

Query: 43  KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 222
           KGK    EVVTREYT+NLH+RLH   FKK+AP AIKEIRKFA K MGT D+RVD +LNK 
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQ 62

Query: 223 LWSKGVRNVP 252
           +WSKG+R  P
Sbjct: 63  IWSKGIRGPP 72



 Score = 29.9 bits (64), Expect = 0.77
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 285 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 386
           NDDED+  + F+LVT   +P   + GL T+ ++  +
Sbjct: 84  NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


>At4g17250.1 68417.m02594 expressed protein
          Length = 416

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 85  TVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 204
           TV   KR   + +KKR   A+K+   + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208


>At3g19400.2 68416.m02460 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 290

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 79  EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 222
           ++ V   K  +G+G K+R  +  K+  KF ++    PD   +  L +F
Sbjct: 46  QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93


>At3g19400.1 68416.m02461 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 362

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 79  EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 222
           ++ V   K  +G+G K+R  +  K+  KF ++    PD   +  L +F
Sbjct: 46  QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93


>At3g51220.1 68416.m05607 expressed protein contains Pfam doamin
           PF05701: Plant protein of unknown function (DUF827)
          Length = 186

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +1

Query: 10  KITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 189
           K  + K + E K  S + E +T+E      K  H +      P+   +++   E  +  P
Sbjct: 53  KENLKKAEEENKVLSQLIESLTQELETTKEKLNHSLRNFPEHPQVEDDLKFIEESTVNEP 112

Query: 190 DIRVDTRLNKF 222
           D   + ++N+F
Sbjct: 113 DNITEIKMNRF 123


>At1g32900.1 68414.m04053 starch synthase, putative similar to
           starch synthase SP:Q42857 from [Ipomoea batatas]
          Length = 610

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 37  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 201
           E+KG   + E +++   +N+   + G G KK   + ++   KF  K +G     V
Sbjct: 412 EQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNV 466


>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 376

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 64  EVVT--REYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 222
           EV+T   ++ V   K  +G+G K+R  +  K+  K  E+    P+   +  LNKF
Sbjct: 36  EVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKF 90


>At2g38300.1 68415.m04705 myb family transcription factor
          Length = 299

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 312 TYVRNLHHHYVFVKASHGHEGNISDSLRPKEFV*ASVYSNVRSS 181
           TY   + +  ++  +S G E ++ D +RP     ASV +N+R S
Sbjct: 113 TYGSKISNASLWNSSSQGTERSLIDQIRPGLIRNASVSNNIRGS 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,213,186
Number of Sequences: 28952
Number of extensions: 146639
Number of successful extensions: 358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)